Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KNV97_RS20150 Genome accession   NZ_CP076643
Coordinates   3046090..3047505 (+) Length   471 a.a.
NCBI ID   WP_407701912.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041090..3052505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS20130 (KNV97_20130) pilM 3043449..3044432 (+) 984 WP_218562648.1 type IV pilus assembly protein PilM -
  KNV97_RS20135 (KNV97_20135) - 3044429..3044992 (+) 564 WP_218562649.1 PilN domain-containing protein -
  KNV97_RS20140 (KNV97_20140) - 3044989..3045597 (+) 609 WP_218562650.1 type 4a pilus biogenesis protein PilO -
  KNV97_RS20145 (KNV97_20145) - 3045590..3046084 (+) 495 WP_218562651.1 hypothetical protein -
  KNV97_RS20150 (KNV97_20150) pilQ 3046090..3047505 (+) 1416 WP_407701912.1 type IV pilus secretin PilQ Machinery gene
  KNV97_RS20155 (KNV97_20155) aroK 3047694..3048212 (+) 519 WP_136485260.1 shikimate kinase AroK -
  KNV97_RS20160 (KNV97_20160) aroB 3048240..3049325 (+) 1086 WP_218562653.1 3-dehydroquinate synthase -
  KNV97_RS20165 (KNV97_20165) - 3049372..3050859 (+) 1488 WP_218562654.1 SPOR domain-containing protein -
  KNV97_RS20170 (KNV97_20170) - 3050974..3051813 (+) 840 WP_218562655.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50813.05 Da        Isoelectric Point: 5.2910

>NTDB_id=576836 KNV97_RS20150 WP_407701912.1 3046090..3047505(+) (pilQ) [Vibrio ostreae strain OG9-811]
MRCPAAVSRFAWVRLLVVNLLRLLILVLAVSGPLTGLASEQATRSASNTITAKPGESARISLNFQAIALRSVLQLLADYQ
GVNLVVSDSVQGELTLRLEDVTWQQALNLILRHSGLEMQRVDGVMLIAPQDEFARQAQHHREQAQLLAPLHSQVVTVHYA
RAQDMAAIIATDGNFGLLSERGSLSVDERTNALLVRDLAPNVADIARMVKALDVPVKQVQIEARIVSINEGDLDELGVRW
GFHSSPAHGRIGASLEENLFAGAGLADESGDLALEDRLNVNLAATSLNASTIAFQVARLGSDTLLDLELSALQRESKAEI
ISSPRLITTNQQPAFIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLNVTQDRPGEVVQTGTGEAVA
INTQRIGTQVLVNDGETVVLGGIFQHSVTHTVDKVPLLGDLPWLGALFRRSYQQSGKGELLIFVTPKVVIQ

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=576836 KNV97_RS20150 WP_407701912.1 3046090..3047505(+) (pilQ) [Vibrio ostreae strain OG9-811]
ATGCGATGTCCCGCAGCGGTCAGTCGCTTTGCCTGGGTGAGATTGCTGGTGGTGAATCTGCTGCGCCTGCTGATCCTGGT
GCTGGCTGTGAGCGGTCCGCTGACCGGGCTGGCGAGCGAGCAGGCGACCAGATCCGCGTCGAATACCATCACAGCTAAGC
CCGGTGAAAGCGCCCGGATTTCACTTAATTTTCAGGCGATAGCGCTGCGCAGTGTGTTGCAGTTACTGGCGGATTATCAG
GGGGTCAATCTGGTGGTGTCGGATAGTGTGCAGGGTGAGCTGACGCTGCGCCTGGAGGATGTCACCTGGCAGCAGGCTCT
GAATCTTATCCTGCGACACAGCGGGCTGGAGATGCAACGGGTGGATGGTGTGATGCTGATTGCGCCGCAGGATGAGTTTG
CCCGTCAGGCCCAGCACCACAGGGAGCAGGCGCAGCTCCTGGCACCGCTGCATAGCCAGGTGGTCACGGTGCATTATGCC
AGAGCGCAGGACATGGCGGCGATCATTGCGACGGACGGTAATTTTGGCCTGCTGTCTGAGCGCGGTTCGCTTAGCGTTGA
TGAACGCACCAATGCGCTGCTGGTGCGCGATCTGGCACCGAACGTTGCGGATATCGCGAGAATGGTCAAAGCGCTCGATG
TGCCGGTCAAGCAGGTGCAGATTGAGGCGCGCATTGTCAGCATCAATGAAGGTGATTTGGATGAGCTGGGGGTACGCTGG
GGATTTCATTCTTCCCCCGCGCATGGCCGGATAGGGGCCTCTCTGGAGGAGAATCTGTTTGCCGGCGCAGGCCTGGCGGA
TGAGTCGGGCGATCTGGCACTGGAAGACCGTCTCAACGTCAATCTGGCGGCCACCTCACTGAATGCGTCCACGATTGCGT
TTCAGGTGGCGCGCCTTGGCTCTGACACCTTGCTTGATCTTGAACTGTCGGCTTTGCAGCGTGAGTCGAAAGCGGAAATT
ATCTCCAGTCCGCGTCTTATCACCACTAATCAACAGCCGGCTTTTATTGAGCAGGGCACAGAAATTCCGTATCTGGAGTC
GTCGTCGAGCGGGGCGACCAGCGTGGCGTTTAAAAAGGCGGTGCTGAGCCTCAAGGTGACCCCGCAGATTACGCCGGATA
ATCGACTGGTGCTGGATTTGAATGTCACTCAGGACCGGCCGGGGGAAGTGGTGCAGACCGGAACTGGTGAAGCGGTTGCC
ATTAACACTCAGCGTATCGGTACCCAGGTGCTGGTTAATGACGGTGAAACCGTGGTGCTGGGCGGTATTTTCCAGCACAG
TGTCACCCATACGGTGGATAAGGTGCCGCTGCTGGGGGACTTGCCGTGGCTGGGGGCATTGTTCCGGCGCAGTTACCAGC
AAAGTGGTAAAGGTGAGCTGCTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(153-218)

Bacterial type II and III secretion system protein (Secretin)

(311-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.979

90.658

0.607
  pilQ Vibrio cholerae strain A1552

67.381

89.172

0.601
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

67.381

89.172

0.601
  pilQ Legionella pneumophila strain ERS1305867

47.733

88.96

0.425
  pilQ Legionella pneumophila strain Lp02

47.733

88.96

0.425
  pilQ Pseudomonas aeruginosa PAK

41.242

95.754

0.395
  comQ Acinetobacter baylyi ADP1

41.518

95.117

0.395
  pilQ Acinetobacter baumannii strain A118

37.662

98.089

0.369
  pilQ Acinetobacter baumannii D1279779

37.662

98.089

0.369