Detailed information NTG0576098

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KPA27_RS00720
• Genome accession: NZ_CP076517
• Coordinates: 118671..119708 (+)
• Length: 345 a.a.
• NCBI ID: WP_238492613.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 39565
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 113671..124708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPA27_RS00705 (KPA27_00705)	-	116373..116738 (+)	366	WP_024395451.1	DUF1033 family protein	-
KPA27_RS00710 (KPA27_00710)	-	116773..117723 (-)	951	WP_014637311.1	S66 peptidase family protein	-
KPA27_RS00715 (KPA27_00715)	comYA	117809..118759 (+)	951	WP_105140681.1	competence type IV pilus ATPase ComGA	Machinery gene
KPA27_RS00720 (KPA27_00720)	comYB	118671..119708 (+)	1038	WP_238492613.1	competence type IV pilus assembly protein ComGB	Machinery gene
KPA27_RS00725 (KPA27_00725)	comYC	119710..119991 (+)	282	WP_024395447.1	competence type IV pilus major pilin ComGC	Machinery gene
KPA27_RS00730 (KPA27_00730)	comGD	119972..120379 (+)	408	WP_024395446.1	competence type IV pilus minor pilin ComGD	-
KPA27_RS00735 (KPA27_00735)	comYE	120351..120644 (+)	294	WP_002936548.1	competence type IV pilus minor pilin ComGE	Machinery gene
KPA27_RS00740 (KPA27_00740)	comGF/cglF	120631..121065 (+)	435	WP_024395445.1	competence type IV pilus minor pilin ComGF	Machinery gene
KPA27_RS00745 (KPA27_00745)	comGG	121043..121453 (+)	411	WP_024395444.1	competence type IV pilus minor pilin ComGG	-
KPA27_RS00750 (KPA27_00750)	comYH	121510..122463 (+)	954	WP_044776365.1	class I SAM-dependent methyltransferase	Machinery gene
KPA27_RS00755 (KPA27_00755)	-	122513..123700 (+)	1188	WP_014637319.1	acetate kinase	-
KPA27_RS00760 (KPA27_00760)	-	123961..124512 (+)	552	WP_014637320.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 38924.91 Da
• Isoelectric Point: 9.0934

>NTDB_id=576098 KPA27_RS00720 WP_238492613.1 118671..119708(+) (comYB) [Streptococcus suis strain 39565]
MNKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLVFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQIYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=576098 KPA27_RS00720 WP_238492613.1 118671..119708(+) (comYB) [Streptococcus suis strain 39565]
ATGAACAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGCGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GTAGCCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCAGATTTGCGGTTTTCGGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAATTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TGGTTTTTTTGCTCTTGATTATGCTGGGTTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAATCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAGTCGCAGCTTTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTAATCCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	63.45	99.13	0.629
comYB	Streptococcus mutans UA140	59.184	99.42	0.588
comYB	Streptococcus mutans UA159	59.184	99.42	0.588
comGB/cglB	Streptococcus mitis NCTC 12261	60	97.101	0.583
comGB/cglB	Streptococcus mitis SK321	59.701	97.101	0.58
comGB/cglB	Streptococcus pneumoniae Rx1	59.403	97.101	0.577
comGB/cglB	Streptococcus pneumoniae D39	59.403	97.101	0.577
comGB/cglB	Streptococcus pneumoniae R6	59.403	97.101	0.577
comGB/cglB	Streptococcus pneumoniae TIGR4	59.403	97.101	0.577
comGB	Lactococcus lactis subsp. cremoris KW2	50.742	97.681	0.496