Detailed information NTG0576100

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MPG83_RS06075
• Genome accession: NZ_CP094140
• Coordinates: 1280015..1281361 (-)
• Length: 448 a.a.
• NCBI ID: WP_180432692.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe035
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1275015..1286361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG83_RS06055 (MPG83_06055)	hopM	1275089..1277164 (+)	2076	WP_245071017.1	Hop family outer membrane protein HopM/HopN	-
MPG83_RS06060 (MPG83_06060)	-	1277335..1278168 (+)	834	WP_199492080.1	sulfite exporter TauE/SafE family protein	-
MPG83_RS06065 (MPG83_06065)	-	1278472..1278691 (-)	220	Protein_1180	DUF3519 domain-containing protein	-
MPG83_RS06070 (MPG83_06070)	msrB	1278811..1279890 (-)	1080	WP_180654887.1	peptide-methionine (R)-S-oxide reductase MsrB	-
MPG83_RS06075 (MPG83_06075)	radA	1280015..1281361 (-)	1347	WP_180432692.1	DNA repair protein RadA	Machinery gene
MPG83_RS06080 (MPG83_06080)	-	1281472..1281705 (-)	234	WP_000450344.1	ribbon-helix-helix domain-containing protein	-
MPG83_RS06085 (MPG83_06085)	-	1281861..1282841 (-)	981	WP_127990205.1	iron-sulfur cluster assembly scaffold protein	-
MPG83_RS06090 (MPG83_06090)	-	1282863..1284026 (-)	1164	WP_000941667.1	NifS family cysteine desulfurase	-
MPG83_RS06095 (MPG83_06095)	-	1284199..1284660 (-)	462	WP_245071019.1	helix-turn-helix domain-containing protein	-
MPG83_RS06100 (MPG83_06100)	-	1284806..1285357 (+)	552	WP_075658036.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
MPG83_RS06105 (MPG83_06105)	-	1285373..1286236 (-)	864	WP_245071021.1	beta-1,4-N-acetylgalactosamyltransferase	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49467.45 Da
• Isoelectric Point: 8.0235

>NTDB_id=576100 MPG83_RS06075 WP_180432692.1 1280015..1281361(-) (radA) [Helicobacter pylori strain Hpfe035]
MAKKTSLFECQHCGFTSPKWLGKCVQCNSWESFIELNQTQKEVLIALKNPLPKAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAVFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=576100 MPG83_RS06075 WP_180432692.1 1280015..1281361(-) (radA) [Helicobacter pylori strain Hpfe035]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGCAAGTGCGTTCAATG
CAACTCATGGGAAAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAATCGCGCTTAAAAACCCTCTCCCAAAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTGATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTGGGTGGGGGGATTGCTAAAGGAGGGTTGTATTTGGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATTGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAACTCATGCGTTTAGCCAAAACAAGAAATATTGCTGTTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACAAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCCAAAGAAGAGCCTATGGAGGGGAGCGCCA
TTACCATCACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGCTTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGGATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCCAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGCCAAAAAACCTCGATCAAATGCTATGAAGCCAATGCGGTGGGTAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.963	95.536	0.449
radA	Streptococcus pneumoniae Rx1	46.963	95.536	0.449
radA	Streptococcus pneumoniae D39	46.963	95.536	0.449
radA	Streptococcus pneumoniae TIGR4	46.963	95.536	0.449
radA	Streptococcus mitis SK321	46.729	95.536	0.446
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.604	95.313	0.444
radA	Streptococcus mitis NCTC 12261	46.495	95.536	0.444