Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KM146_RS21250 Genome accession   NZ_CP076287
Coordinates   2870547..2871656 (-) Length   369 a.a.
NCBI ID   WP_042523881.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZJ-0     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2865547..2876656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS21220 (KM146_21215) hemF 2866008..2866925 (-) 918 WP_065274969.1 oxygen-dependent coproporphyrinogen oxidase -
  KM146_RS21225 (KM146_21220) - 2866973..2867530 (-) 558 WP_065274970.1 L-threonylcarbamoyladenylate synthase -
  KM146_RS21230 (KM146_21225) purE 2867730..2868215 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  KM146_RS21235 (KM146_21230) - 2868220..2869353 (+) 1134 WP_065274971.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KM146_RS21240 (KM146_21235) - 2869419..2869988 (-) 570 WP_017821580.1 type I DNA topoisomerase -
  KM146_RS21245 (KM146_21240) - 2870065..2870544 (-) 480 WP_005379074.1 DUF494 family protein -
  KM146_RS21250 (KM146_21245) dprA 2870547..2871656 (-) 1110 WP_042523881.1 DNA-processing protein DprA Machinery gene
  KM146_RS21255 (KM146_21250) - 2871640..2872734 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  KM146_RS21260 (KM146_21255) def 2872873..2873391 (+) 519 WP_005379068.1 peptide deformylase -
  KM146_RS21265 (KM146_21260) fmt 2873425..2874372 (+) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  KM146_RS21270 (KM146_21265) rsmB 2874453..2875736 (+) 1284 WP_065274972.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39978.70 Da        Isoelectric Point: 6.8191

>NTDB_id=574424 KM146_RS21250 WP_042523881.1 2870547..2871656(-) (dprA) [Vibrio alginolyticus strain ZJ-0]
MNRRNNDDLDAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPCYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=574424 KM146_RS21250 WP_042523881.1 2870547..2871656(-) (dprA) [Vibrio alginolyticus strain ZJ-0]
ATGAATCGACGAAATAACGATGATCTCGATGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGAAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCCGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379