Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   KM579_RS08140 Genome accession   NZ_CP076252
Coordinates   1837711..1838841 (+) Length   376 a.a.
NCBI ID   WP_074379107.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. graminis strain ART-Xtg9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832711..1843841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM579_RS08115 (KM579_08060) - 1832770..1833225 (-) 456 WP_009599965.1 DUF4426 domain-containing protein -
  KM579_RS08120 (KM579_08065) proC 1833240..1834082 (-) 843 WP_009599964.1 pyrroline-5-carboxylate reductase -
  KM579_RS08125 (KM579_08070) - 1834212..1835258 (-) 1047 WP_009599963.1 hypothetical protein -
  KM579_RS08130 (KM579_08075) - 1835750..1836400 (-) 651 WP_039956286.1 YggS family pyridoxal phosphate-dependent enzyme -
  KM579_RS08135 (KM579_08080) pilT 1836525..1837562 (+) 1038 WP_003471666.1 type IV pilus twitching motility protein PilT Machinery gene
  KM579_RS08140 (KM579_08085) pilU 1837711..1838841 (+) 1131 WP_074379107.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  KM579_RS08145 (KM579_08090) - 1839097..1839636 (-) 540 WP_009599959.1 DNA-3-methyladenine glycosylase I -
  KM579_RS08150 (KM579_08095) - 1839652..1841462 (-) 1811 Protein_1602 DUF4153 domain-containing protein -
  KM579_RS08155 (KM579_08100) - 1841570..1842136 (+) 567 WP_009599956.1 YqgE/AlgH family protein -
  KM579_RS08160 (KM579_08105) ruvX 1842129..1842626 (+) 498 WP_053113829.1 Holliday junction resolvase RuvX -
  KM579_RS08165 (KM579_08110) - 1842646..1843593 (+) 948 WP_009599900.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41945.30 Da        Isoelectric Point: 6.8811

>NTDB_id=574053 KM579_RS08140 WP_074379107.1 1837711..1838841(+) (pilU) [Xanthomonas translucens pv. graminis strain ART-Xtg9]
MSTIDFTSFLKLMAHQKASDLFITAGMPPAIKVHGKITPITQTPLTAQQSRDLVLNVMTPAQREEFEKTHECNFAIGVAG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRSQLLMDLSLNMRGVVAQQLIPTPDGKSRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQTEVRLRIKLAQGGDARTLAQGMDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=574053 KM579_RS08140 WP_074379107.1 1837711..1838841(+) (pilU) [Xanthomonas translucens pv. graminis strain ART-Xtg9]
ATGAGCACCATCGACTTCACCTCGTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCGCGGGCAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCGCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACCCCGGCGCAGCGCGAGGAATTCGAGAAGACCCACGAGTGCAACTTCGCCATCGGCGTGGCCGGG
GTCGGGCGCTTCCGCGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAGACGCGTATCCC
CACCGTCGACGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAGTTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCACGCGATCTCCTTCGCCGAGACCGGCCACCTGGTGTTGTGCACCCTGCATGCCAACAACGCCAATCAGGCGATG
GACCGGATCATCAACTTCTTCCCCGAGGACCGCCGCAGCCAGCTGCTGATGGACTTGTCGCTGAACATGCGCGGCGTGGT
CGCCCAGCAGCTGATCCCGACCCCCGACGGCAAGAGCCGCCGCGTGGCGATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCACGCCGACTCGCAGACCGA
AGTGCGCCTGCGCATCAAGCTCGCCCAGGGCGGCGACGCCAGGACCCTGGCGCAGGGCATGGACGGGGTGGAAATCGCCG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

65.312

98.138

0.641
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

52.809

94.681

0.5
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.571

93.085

0.396
  pilT Pseudomonas aeruginosa PAK

40.708

90.16

0.367
  pilT Acinetobacter nosocomialis M2

40.116

91.489

0.367
  pilT Acinetobacter baumannii D1279779

40.116

91.489

0.367
  pilT Acinetobacter baumannii strain A118

40.116

91.489

0.367