Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCNPT3_RS11595 Genome accession   NC_020802
Coordinates   2630458..2631690 (-) Length   410 a.a.
NCBI ID   WP_015466048.1    Uniprot ID   M4U7D1
Organism   Psychromonas sp. CNPT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625458..2636690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCNPT3_RS11580 (PCNPT3_11150) nagB 2626682..2627482 (+) 801 WP_015466045.1 glucosamine-6-phosphate deaminase -
  PCNPT3_RS11585 (PCNPT3_11155) nagA 2627600..2628733 (+) 1134 WP_015466046.1 N-acetylglucosamine-6-phosphate deacetylase -
  PCNPT3_RS11590 (PCNPT3_11160) - 2629050..2630273 (+) 1224 WP_015466047.1 ROK family protein -
  PCNPT3_RS11595 (PCNPT3_11165) pilC 2630458..2631690 (-) 1233 WP_015466048.1 type II secretion system F family protein Machinery gene
  PCNPT3_RS11600 (PCNPT3_11170) pilB 2631712..2633403 (-) 1692 WP_015466049.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCNPT3_RS14355 (PCNPT3_11175) - 2633415..2633819 (-) 405 WP_015466050.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PCNPT3_RS11610 (PCNPT3_11180) - 2634330..2634764 (+) 435 WP_015466051.1 transcriptional repressor -
  PCNPT3_RS11615 (PCNPT3_11185) - 2634824..2635288 (+) 465 WP_015466052.1 chemotaxis protein CheX -
  PCNPT3_RS11620 (PCNPT3_11190) - 2635446..2636120 (-) 675 WP_015466053.1 hypothetical protein -
  PCNPT3_RS11625 (PCNPT3_11195) - 2636232..2636675 (-) 444 WP_015466054.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44866.96 Da        Isoelectric Point: 9.6305

>NTDB_id=57373 PCNPT3_RS11595 WP_015466048.1 2630458..2631690(-) (pilC) [Psychromonas sp. CNPT3]
MSAPKKIKATAVHTFKWKGINRKGGKIDGEFQGVSVAEVKANLRKQGVNVTRIQKVAKPLFSFGKKISPMDIALISRQIA
TMLGAGVPLVQTLSLIAHSTDNVPLRELMSSVSNEISTGTPMSKALREHPKYFDDLYCDLVDAGEQSGALDTIYDRIAIY
KEKSEALKSKIKKAMFYPTAVLVVAGLVTLLLLLFVIPQFKTIFAGFGAELPAFTLFVLHISDLVKEYWYLIGIFFFGSV
WAFKKAYAKSEKFRNQCDKLELKIPVISTILEKAAVARFARTLSTTFAAGIPLIDALISASGASGNYVYRSAITKIRTEV
MAGMQMNVAMKMTGTFPEMLSQMVMIGEESGNLDNMLSKVADIYEQQVDDAVDALTSLLEPFIMVVLGIIVGGLIVAMYL
PIFELGSVIG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=57373 PCNPT3_RS11595 WP_015466048.1 2630458..2631690(-) (pilC) [Psychromonas sp. CNPT3]
ATGTCAGCCCCTAAAAAAATAAAGGCCACCGCGGTCCATACGTTTAAATGGAAAGGAATTAACCGTAAAGGTGGGAAAAT
AGACGGTGAATTTCAGGGGGTATCGGTTGCTGAAGTAAAGGCCAACTTACGTAAACAAGGGGTCAATGTCACGCGTATAC
AAAAAGTGGCGAAACCTCTTTTTAGCTTTGGTAAAAAAATTAGCCCCATGGATATTGCGCTGATCTCTCGGCAAATCGCG
ACGATGCTAGGTGCGGGCGTACCTTTAGTGCAAACCTTAAGTTTAATTGCGCATAGTACGGATAATGTGCCTTTACGAGA
ATTAATGAGCTCAGTGAGCAATGAAATATCAACTGGCACGCCAATGTCTAAAGCGTTACGTGAGCACCCTAAATATTTTG
ATGATTTATATTGCGACCTGGTTGATGCGGGCGAGCAATCGGGCGCTTTAGATACGATTTATGATCGTATTGCGATTTAT
AAAGAAAAGTCTGAAGCCTTAAAATCGAAAATTAAAAAAGCAATGTTCTATCCAACGGCGGTTTTAGTCGTTGCAGGCTT
AGTCACCTTATTACTTTTGCTGTTTGTTATCCCACAATTTAAAACTATCTTTGCAGGCTTTGGCGCCGAATTGCCTGCTT
TTACATTGTTTGTATTACATATTTCAGATCTGGTTAAGGAATACTGGTATTTGATCGGGATCTTTTTCTTTGGCAGTGTT
TGGGCTTTTAAAAAAGCTTATGCAAAATCTGAAAAATTCCGCAATCAGTGTGATAAATTAGAGCTTAAAATTCCCGTTAT
TAGTACCATTTTAGAAAAAGCTGCCGTTGCGCGTTTTGCGCGCACCTTATCGACCACTTTTGCTGCGGGGATCCCTTTGA
TAGATGCTTTGATATCTGCCTCTGGCGCCTCAGGAAACTATGTGTACCGTAGCGCTATCACAAAAATACGCACTGAGGTG
ATGGCGGGCATGCAAATGAACGTGGCGATGAAAATGACGGGCACTTTTCCGGAGATGCTCTCACAAATGGTGATGATCGG
CGAAGAGTCAGGTAATCTAGATAATATGCTAAGTAAAGTTGCCGATATTTACGAGCAACAAGTCGATGATGCGGTGGATG
CATTAACCAGCCTATTAGAGCCTTTTATTATGGTTGTTTTAGGTATTATTGTTGGTGGCTTGATTGTTGCCATGTACTTA
CCTATCTTCGAGTTAGGTAGTGTTATCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4U7D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.209

98.049

0.571
  pilC Legionella pneumophila strain ERS1305867

53.652

96.829

0.52
  pilC Acinetobacter baumannii D1279779

50.743

98.537

0.5
  pilC Acinetobacter baylyi ADP1

48.762

98.537

0.48
  pilC Vibrio campbellii strain DS40M4

44.988

99.756

0.449
  pilC Vibrio cholerae strain A1552

43.489

99.268

0.432
  pilG Neisseria meningitidis 44/76-A

40.731

93.415

0.38
  pilG Neisseria gonorrhoeae MS11

40.731

93.415

0.38

Multiple sequence alignment