Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KJJ31_RS07560 Genome accession   NZ_CP076126
Coordinates   1541882..1543573 (-) Length   563 a.a.
NCBI ID   WP_215619724.1    Uniprot ID   -
Organism   Listeria monocytogenes strain LM20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536882..1548573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJJ31_RS07540 (KJJ31_01510) - 1537220..1538215 (-) 996 WP_010958893.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  KJJ31_RS07545 (KJJ31_01511) lpdA 1538240..1539667 (-) 1428 WP_003734501.1 dihydrolipoyl dehydrogenase -
  KJJ31_RS07550 (KJJ31_01512) buk 1539682..1540749 (-) 1068 WP_003727472.1 butyrate kinase -
  KJJ31_RS07555 (KJJ31_01513) - 1540886..1541752 (-) 867 WP_070287412.1 phosphate acyltransferase -
  KJJ31_RS07560 (KJJ31_01514) recN 1541882..1543573 (-) 1692 WP_215619724.1 DNA repair protein RecN Machinery gene
  KJJ31_RS07565 (KJJ31_01515) argR 1543596..1544045 (-) 450 WP_003722493.1 transcriptional regulator ArgR -
  KJJ31_RS07570 (KJJ31_01516) - 1544236..1545060 (-) 825 WP_003726253.1 TlyA family RNA methyltransferase -
  KJJ31_RS07575 (KJJ31_01517) dxs 1545057..1546886 (-) 1830 WP_003727474.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KJJ31_RS07580 (KJJ31_01518) - 1547053..1547253 (-) 201 WP_003719639.1 cold-shock protein -
  KJJ31_RS07585 (KJJ31_01519) - 1547452..1548333 (-) 882 WP_061661467.1 polyprenyl synthetase family protein -
  KJJ31_RS07590 (KJJ31_01520) - 1548336..1548563 (-) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63517.28 Da        Isoelectric Point: 5.1955

>NTDB_id=572232 KJJ31_RS07560 WP_215619724.1 1541882..1543573(-) (recN) [Listeria monocytogenes strain LM20]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDNMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=572232 KJJ31_RS07560 WP_215619724.1 1541882..1543573(-) (recN) [Listeria monocytogenes strain LM20]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATAATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAACTTGTAACTACCGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATTCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTGTCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACGAAAAATGAGCGGGAATT
AGCGCAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAGGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAGGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGTGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGGCAATCACTAGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGTAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAAGCAAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACATTAGAAAAACAAATCAAACAAGAATTAAATCACTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTCGAA
GCAAACAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCATCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGGGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535