Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KJV86_RS06920 Genome accession   NZ_CP076125
Coordinates   1384065..1385309 (+) Length   414 a.a.
NCBI ID   WP_039176426.1    Uniprot ID   A0A4B0GFT0
Organism   Listeria monocytogenes strain LM4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1379065..1390309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJV86_RS06900 (KJV86_01380) - 1380239..1381525 (+) 1287 WP_003732282.1 pitrilysin family protein -
  KJV86_RS06905 (KJV86_01381) - 1381617..1382348 (+) 732 WP_003732283.1 SDR family oxidoreductase -
  KJV86_RS06910 (KJV86_01382) - 1382399..1383328 (+) 930 WP_054314524.1 RodZ family helix-turn-helix domain-containing protein -
  KJV86_RS06915 (KJV86_01383) pgsA 1383418..1383996 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KJV86_RS06920 (KJV86_01384) cinA 1384065..1385309 (+) 1245 WP_039176426.1 competence/damage-inducible protein A Machinery gene
  KJV86_RS06925 (KJV86_01385) recA 1385582..1386628 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  KJV86_RS06930 (KJV86_01386) rny 1386929..1388491 (+) 1563 WP_003721904.1 ribonuclease Y -
  KJV86_RS06935 (KJV86_01387) - 1388605..1389102 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  KJV86_RS06940 (KJV86_01388) - 1389108..1389911 (+) 804 WP_054314287.1 TIGR00282 family metallophosphoesterase -
  KJV86_RS06945 (KJV86_01389) - 1389928..1390290 (+) 363 WP_054314286.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45665.90 Da        Isoelectric Point: 4.8685

>NTDB_id=572189 KJV86_RS06920 WP_039176426.1 1384065..1385309(+) (cinA) [Listeria monocytogenes strain LM4]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRTMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=572189 KJV86_RS06920 WP_039176426.1 1384065..1385309(+) (cinA) [Listeria monocytogenes strain LM4]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAACCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTATTTCAAGCGGAAATTGCTCGATTTC
CTGGTATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4B0GFT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.792

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus mutans UA159

49.029

99.517

0.488
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386