Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSU6051_RS11645 Genome accession   NC_020507
Coordinates   2340801..2341421 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis 6051-HGW     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335801..2346421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU6051_RS11605 (BSU6051_22230) ptsA 2336932..2337438 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  BSU6051_RS11610 (BSU6051_22240) ypqA 2337576..2337995 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  BSU6051_RS11615 (BSU6051_22250) sppG 2338016..2338393 (-) 378 WP_004398696.1 YppG family protein -
  BSU6051_RS11620 (BSU6051_22260) yppF 2338581..2338769 (+) 189 WP_003230690.1 YppF family protein -
  BSU6051_RS11625 (BSU6051_22270) yppE 2338808..2339179 (-) 372 WP_003246080.1 YppE family protein -
  BSU6051_RS11630 (BSU6051_22280) yppD 2339225..2339470 (-) 246 WP_004398488.1 YppD family protein -
  BSU6051_RS11635 (BSU6051_22290) sspM 2339669..2339773 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BSU6051_RS11640 (BSU6051_22300) yppC 2339798..2340760 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  BSU6051_RS11645 (BSU6051_22310) recU 2340801..2341421 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BSU6051_RS11650 (BSU6051_22320) ponA 2341443..2344187 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  BSU6051_RS11655 (BSU6051_22330) ypoC 2344263..2344757 (-) 495 WP_009967579.1 YpoC family protein -
  BSU6051_RS11660 (BSU6051_22340) nth 2344754..2345413 (-) 660 WP_009967580.1 endonuclease III -
  BSU6051_RS11665 (BSU6051_22350) dnaD 2345432..2346130 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=56569 BSU6051_RS11645 WP_004399067.1 2340801..2341421(+) (recU) [Bacillus subtilis subsp. subtilis 6051-HGW]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=56569 BSU6051_RS11645 WP_004399067.1 2340801..2341421(+) (recU) [Bacillus subtilis subsp. subtilis 6051-HGW]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment