Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SITYG_RS09090 Genome accession   NZ_AP014880
Coordinates   1789877..1790203 (-) Length   108 a.a.
NCBI ID   WP_020999196.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784877..1795203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS09075 (SITYG_17970) glmS 1785391..1787205 (-) 1815 WP_009569505.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  SITYG_RS09080 (SITYG_17980) - 1787587..1788786 (-) 1200 WP_009569506.1 acetate kinase -
  SITYG_RS09085 (SITYG_17990) comGH 1788833..1789786 (-) 954 WP_096363205.1 class I SAM-dependent methyltransferase Machinery gene
  SITYG_RS09090 (SITYG_18000) comGG/cglG 1789877..1790203 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG Machinery gene
  SITYG_RS09095 (SITYG_18010) comGF/cglF 1790184..1790621 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SITYG_RS09100 (SITYG_18020) comGE/cglE 1790605..1790898 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  SITYG_RS09105 (SITYG_18030) comGD 1790870..1791298 (-) 429 WP_096363206.1 competence type IV pilus minor pilin ComGD Machinery gene
  SITYG_RS09110 (SITYG_18040) comGC 1791258..1791575 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SITYG_RS09115 (SITYG_18050) comGB 1791572..1792594 (-) 1023 WP_173672242.1 competence type IV pilus assembly protein ComGB Machinery gene
  SITYG_RS09120 (SITYG_18060) comGA 1792536..1793477 (-) 942 WP_096363208.1 competence type IV pilus ATPase ComGA Machinery gene
  SITYG_RS09125 (SITYG_18070) - 1793546..1793911 (-) 366 WP_009569514.1 DUF1033 family protein -
  SITYG_RS09130 (SITYG_18080) - 1794040..1794756 (-) 717 WP_009569515.1 TipC family immunity protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12900.83 Da        Isoelectric Point: 10.6199

>NTDB_id=56566 SITYG_RS09090 WP_020999196.1 1789877..1790203(-) (comGG/cglG) [Streptococcus intermedius strain TYG1620]
MWKQKVKAGIMLHALFMTAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANEDSRHREFDKGHVQEQQGEKELTL
TVTMKTGRHYQFRFPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=56566 SITYG_RS09090 WP_020999196.1 1789877..1790203(-) (comGG/cglG) [Streptococcus intermedius strain TYG1620]
GTGTGGAAACAAAAAGTTAAAGCAGGCATTATGCTCCATGCCCTTTTTATGACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAATCGAGAACGACTACAGGCGTATGCAATGGCAGTTA
TCGCAAACGAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGAGCAACAAGGTGAGAAAGAGCTCACCCTG
ACAGTAACAATGAAGACGGGTCGCCATTATCAATTTCGTTTTCCGTTTGAGAAGACCAAACTAACCAATGACAATCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

46.535

93.519

0.435
  comGG/cglG Streptococcus mitis SK321

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae Rx1

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae D39

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae R6

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

42.574

93.519

0.398

Multiple sequence alignment