Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SITYG_RS05470 Genome accession   NZ_AP014880
Coordinates   1080036..1080740 (-) Length   234 a.a.
NCBI ID   WP_096362893.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075036..1085740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS05455 (SITYG_10650) - 1075601..1076587 (-) 987 WP_096362891.1 Gfo/Idh/MocA family protein -
  SITYG_RS05460 (SITYG_10660) - 1077027..1077740 (-) 714 WP_048786492.1 DUF805 domain-containing protein -
  SITYG_RS05465 (SITYG_10670) comEC/celB 1077818..1080052 (-) 2235 WP_096362892.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SITYG_RS05470 (SITYG_10680) comEA/celA/cilE 1080036..1080740 (-) 705 WP_096362893.1 helix-hairpin-helix domain-containing protein Machinery gene
  SITYG_RS05475 (SITYG_10700) smpB 1080908..1081375 (-) 468 WP_096362894.1 SsrA-binding protein SmpB -
  SITYG_RS05480 (SITYG_10710) rnr 1081338..1083677 (-) 2340 WP_096362895.1 ribonuclease R -
  SITYG_RS05485 (SITYG_10720) secG 1083768..1084001 (-) 234 WP_003024744.1 preprotein translocase subunit SecG -
  SITYG_RS05490 (SITYG_10740) - 1084410..1085717 (-) 1308 WP_096362393.1 ISLre2 family transposase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25386.93 Da        Isoelectric Point: 9.7605

>NTDB_id=56529 SITYG_RS05470 WP_096362893.1 1080036..1080740(-) (comEA/celA/cilE) [Streptococcus intermedius strain TYG1620]
MLEVIVAKIKEYKILVVLSLIGLIIAGFFMMTSKSARQSNVGDVVQETTNAKLERKETSTETKKKQQKEETKSQKILASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVAAMGENVTNAASNNGQTLTK
DTNGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYREANGKFNSVDDLKNVSGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=56529 SITYG_RS05470 WP_096362893.1 1080036..1080740(-) (comEA/celA/cilE) [Streptococcus intermedius strain TYG1620]
ATGTTAGAGGTAATCGTCGCAAAAATCAAAGAGTATAAAATTTTAGTTGTTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTATGATGACTAGTAAATCTGCTAGACAATCTAATGTGGGAGATGTTGTACAAGAGACCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAAAATCTCAAAAGATTTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACGAGCCGAAT
CAATGATGCTATCCAAAAAGCGGGTGGACTAACAACAGACGCTGACAGCAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTATGTGGCAGCTATGGGTGAAAATGTAACAAATGCTGCAAGTAATAATGGACAAACTTTAACGAAA
GATACCAATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCTAATTTGTCTGATTTACAGTCTATTTC
TGGTATCGGACAAAAACGCGCTCAAGATATTTTAGATTATCGTGAGGCAAATGGAAAATTTAATTCTGTTGATGATCTTA
AAAATGTATCAGGAGTTGGTGCTAAAACATTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(87-140)

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis SK321

49.367

100

0.5
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.785

99.573

0.496
  comEA/celA/cilE Streptococcus pneumoniae D39

49.356

99.573

0.491
  comEA/celA/cilE Streptococcus pneumoniae R6

49.356

99.573

0.491
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.356

99.573

0.491
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.356

99.573

0.491
  comEA Streptococcus thermophilus LMD-9

42.308

100

0.423
  comEA Lactococcus lactis subsp. cremoris KW2

39.056

99.573

0.389

Multiple sequence alignment