Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KG086_RS03830 Genome accession   NZ_CP074378
Coordinates   789224..790465 (+) Length   413 a.a.
NCBI ID   WP_129302211.1    Uniprot ID   A0A4Q1TR15
Organism   Lacticaseibacillus chiayiensis strain FBL7     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 784224..795465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG086_RS03810 (KG086_03810) yfmH 785358..786653 (+) 1296 WP_213224316.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KG086_RS03815 (KG086_03815) ymfI 786650..787378 (+) 729 WP_129301659.1 elongation factor P 5-aminopentanone reductase -
  KG086_RS03820 (KG086_03820) - 787465..788364 (+) 900 WP_129301658.1 helix-turn-helix domain-containing protein -
  KG086_RS03825 (KG086_03825) pgsA 788361..788954 (+) 594 WP_129301657.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KG086_RS03830 (KG086_03830) cinA 789224..790465 (+) 1242 WP_129302211.1 competence/damage-inducible protein A Machinery gene
  KG086_RS03835 (KG086_03835) recA 790514..791557 (+) 1044 WP_129302210.1 recombinase RecA Machinery gene
  KG086_RS03840 (KG086_03840) rny 792024..793595 (+) 1572 WP_010489446.1 ribonuclease Y -
  KG086_RS03845 (KG086_03845) - 793742..794395 (-) 654 WP_129302209.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44339.89 Da        Isoelectric Point: 7.0873

>NTDB_id=564461 KG086_RS03830 WP_129302211.1 789224..790465(+) (cinA) [Lacticaseibacillus chiayiensis strain FBL7]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LASHLNLPLVEDADAMAKLTARVKQQQRPMTPNNKLQAMYPQGADVLVNRVGLAVGAWIKQKQHAYVLLPGPPKEFVPMV
DHELLPHLAKYSGHHEVLVSRVMRFFGIGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGKTQTDADAKLEPVI
GTIMDREGRYFYGYGDDNSLVKELVKALAATDKQITAAESLTAGEFQAALGDVPGVSSYFKGGFVTYSLATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARLGQAPIAQVYHFPGGRNDVRKRAV
MTGMMMALRSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=564461 KG086_RS03830 WP_129302211.1 789224..790465(+) (cinA) [Lacticaseibacillus chiayiensis strain FBL7]
ATGCAAGCAGAGATTATTGCCGTCGGAACTGAAATTCTGATGGGTCAGATTACCAATACTAATGGCGCCTATATGGCTAA
ACAATTGGCCGCTCTTGGAATTGCTAGCTATCATCAACAAGTTGTCGGTGACAATGCGCAGCGCTTGGCGGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATCGTGATTTTGATTGGCGGTTTGGGACCAACGCCGGATGACTTGACAAAACAAACG
TTGGCGTCACATTTAAATTTACCACTGGTTGAAGATGCCGATGCGATGGCAAAATTGACAGCACGTGTCAAGCAACAGCA
ACGACCGATGACGCCAAATAACAAACTACAGGCAATGTATCCGCAAGGTGCTGATGTGTTGGTCAATCGAGTGGGGTTGG
CTGTTGGTGCTTGGATCAAGCAAAAGCAGCATGCTTATGTGTTACTGCCTGGGCCGCCTAAGGAATTTGTTCCCATGGTT
GATCACGAGTTGTTACCGCATTTGGCTAAGTACAGTGGGCATCACGAAGTTTTGGTCAGTCGCGTGATGCGTTTCTTTGG
CATCGGTGAATCACAATTGGTGACGGATCTCGGCGACTTAATTGCCAAACAGACGAATCCGACACTTGCCACCTACATCA
AAGATCATGAGGTGACCATTCGGGTGACGGCAAGCGGTAAGACCCAAACAGACGCTGACGCAAAACTGGAGCCTGTGATC
GGAACCATTATGGATCGTGAAGGTCGTTATTTTTATGGTTATGGCGATGATAACAGTTTGGTCAAAGAGCTGGTGAAGGC
ATTAGCGGCGACCGATAAGCAAATAACAGCGGCAGAGAGCTTGACTGCCGGTGAATTTCAGGCGGCTTTGGGGGATGTTC
CCGGGGTCTCGAGTTATTTCAAAGGCGGTTTTGTGACGTATTCACTAGCCACGAAAGCAGCGTTTTTGAACATTGATGCA
CGTGAGTTAGCCGCTCATGGGGTGGTTAGTGAATTTACCGCAAAGGCAATGGCCGAACATGCTCGTCAGCGAGCAGCAGC
CGATATTGCAGTCAGTTTTACCGGAGTTGCCGGTCCGGACACGTTGGAAGGGCAACCAGCCGGGACCGTTTGGATAGGAT
TGGCGCGACTTGGACAAGCACCGATCGCACAGGTTTATCATTTTCCCGGTGGTCGTAATGATGTTCGTAAACGGGCCGTG
ATGACAGGTATGATGATGGCACTAAGAAGTTTGCGTGATTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1TR15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.831

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.594

100

0.516
  cinA Streptococcus mutans UA159

51.449

100

0.516
  cinA Streptococcus pneumoniae TIGR4

50.119

100

0.511
  cinA Streptococcus pneumoniae Rx1

49.644

100

0.506
  cinA Streptococcus pneumoniae R6

49.644

100

0.506
  cinA Streptococcus pneumoniae D39

49.406

100

0.504
  cinA Bacillus subtilis subsp. subtilis str. 168

44.526

99.516

0.443
  cinA Streptococcus suis isolate S10

42.593

91.525

0.39