Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KCU57_RS05000 Genome accession   NZ_CP074365
Coordinates   1162587..1163846 (-) Length   419 a.a.
NCBI ID   WP_237650390.1    Uniprot ID   -
Organism   Xanthomonas translucens strain CFBP 8304     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157587..1168846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCU57_RS04975 - 1158664..1158858 (+) 195 WP_229017631.1 hypothetical protein -
  KCU57_RS04980 (KCU57_04945) - 1158956..1159633 (+) 678 WP_003466405.1 response regulator transcription factor -
  KCU57_RS04985 (KCU57_04950) - 1159626..1160960 (+) 1335 WP_058359046.1 HAMP domain-containing sensor histidine kinase -
  KCU57_RS04990 (KCU57_04955) coaE 1161083..1161703 (-) 621 WP_237650389.1 dephospho-CoA kinase -
  KCU57_RS04995 (KCU57_04960) - 1161717..1162580 (-) 864 WP_058195837.1 A24 family peptidase -
  KCU57_RS05000 (KCU57_04965) pilC 1162587..1163846 (-) 1260 WP_237650390.1 type II secretion system F family protein Machinery gene
  KCU57_RS05005 (KCU57_04970) - 1164228..1164677 (+) 450 WP_053838007.1 pilin -
  KCU57_RS05010 (KCU57_04975) - 1164911..1165177 (-) 267 WP_237650391.1 hypothetical protein -
  KCU57_RS05015 (KCU57_04980) pilB 1165404..1167140 (+) 1737 WP_237650392.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCU57_RS05020 (KCU57_04985) - 1167168..1167461 (-) 294 WP_009580422.1 addiction module antidote protein -
  KCU57_RS05025 (KCU57_04990) - 1167464..1167760 (-) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45451.66 Da        Isoelectric Point: 10.1709

>NTDB_id=564296 KCU57_RS05000 WP_237650390.1 1162587..1163846(-) (pilC) [Xanthomonas translucens strain CFBP 8304]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGIKMKGEQTAKNANMLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWLL
LLIVLVGSIVGFIFAYKRSPSMQHGMDKLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=564296 KCU57_RS05000 WP_237650390.1 1162587..1163846(-) (pilC) [Xanthomonas translucens strain CFBP 8304]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACATGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCTCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTTGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGCGGTGGCGCTGCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCAGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTTGCTTATTGGTTGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CAAGTTGATTCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCACGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTACTGCGCATGCGTGACGATGTCTCGGTGGGCTACCCGGTCAATGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGAATGGTGGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Legionella pneumophila strain ERS1305867

51.485

96.42

0.496
  pilC Acinetobacter baylyi ADP1

50.62

96.181

0.487
  pilC Acinetobacter baumannii D1279779

50.62

96.181

0.487
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.462

94.988

0.403
  pilC Vibrio campbellii strain DS40M4

39.798

94.749

0.377
  pilC Thermus thermophilus HB27

38.75

95.465

0.37