Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHA79_RS04545 Genome accession   NZ_CP074364
Coordinates   1060902..1062161 (-) Length   419 a.a.
NCBI ID   WP_039005787.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. cerealis strain CFBP 2541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1055902..1067161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA79_RS04520 (KHA79_04500) - 1056755..1057051 (+) 297 WP_235426716.1 hypothetical protein -
  KHA79_RS04525 (KHA79_04505) - 1057150..1057827 (+) 678 WP_003466405.1 response regulator transcription factor -
  KHA79_RS04530 (KHA79_04510) - 1057820..1059160 (+) 1341 WP_039005790.1 sensor histidine kinase -
  KHA79_RS04535 (KHA79_04515) coaE 1059398..1060018 (-) 621 WP_039005789.1 dephospho-CoA kinase -
  KHA79_RS04540 (KHA79_04520) - 1060032..1060895 (-) 864 WP_039005788.1 prepilin peptidase -
  KHA79_RS04545 (KHA79_04525) pilC 1060902..1062161 (-) 1260 WP_039005787.1 type II secretion system F family protein Machinery gene
  KHA79_RS04550 (KHA79_04530) pilA 1062543..1062977 (+) 435 WP_039005786.1 pilin Machinery gene
  KHA79_RS04555 (KHA79_04535) - 1063118..1063537 (-) 420 WP_200886351.1 hypothetical protein -
  KHA79_RS04560 (KHA79_04540) pilB 1063764..1065500 (+) 1737 WP_039005784.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHA79_RS04565 (KHA79_04545) - 1065675..1066127 (-) 453 WP_230812364.1 Fic/DOC family protein -
  KHA79_RS04570 (KHA79_04550) - 1066124..1066306 (-) 183 WP_003477093.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45744.08 Da        Isoelectric Point: 10.2308

>NTDB_id=564279 KHA79_RS04545 WP_039005787.1 1060902..1062161(-) (pilC) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
MSATRSAAKKEPIIRTTSQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLIIIFGSIGGFIFAYKRSPSMQHGMDRLVLKVPIIGHIMHNSAIARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=564279 KHA79_RS04545 WP_039005787.1 1060902..1062161(-) (pilC) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
ATGTCCGCAACGCGCAGTGCAGCCAAAAAAGAGCCGATCATCCGCACTACCAGCCAGCAGGTGCCGTTCGTCTGGGAGGG
AACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCCGTGGTCAAACCAAAACCCAAGCCCCTCTTCGGCGCCGCTGGCAGCAAGATCAGCACCAAGGAC
ATCGCGTTTTTCAGCCGACAGATGGCGACTATGATGAAGTCCGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAGGGCGGCTCATCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGTGAAGGCGCCGGTGTGCTCGAA
ACCGTACTGGAGACGGTCGCAACCTACAAAGAGAACATCGAAGCGCTGAAGGGCAAGATCAAAAAGGCGTTGTTCTACCC
GGCCATGGTCATGGCAGTAGCGCTGCTGGTCAGCTCGATTCTGCTGGTGTGGGTAGTGCCGCAGTTCGAGGACGTATTCA
AGGGCTTTGGTGCGGAGTTGCCGGCATTTACCCAGATGATCGTGGCCGCCTCGCGCTTCATGGTCGCCTATTGGTGGATG
CTGCTGATCATCATCTTTGGCAGCATTGGCGGCTTCATCTTCGCCTACAAACGCTCGCCATCGATGCAACATGGCATGGA
CCGGCTGGTGCTGAAAGTGCCGATCATCGGCCATATCATGCACAACAGCGCCATTGCGCGCTTTTCGCGCACGCTGGGCG
TGACCTTCCGTGCCGGCGTGCCGCTGGTTGAAGCTCTCGATATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGATGACGTCTCGGTCGGCTATCCGGTCAACATGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTAGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.75

95.465

0.513
  pilC Acinetobacter baumannii D1279779

51.613

96.181

0.496
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.511

0.496
  pilC Acinetobacter baylyi ADP1

51.365

96.181

0.494
  pilC Vibrio cholerae strain A1552

42.963

96.659

0.415
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilG Neisseria meningitidis 44/76-A

42.607

95.227

0.406
  pilC Vibrio campbellii strain DS40M4

41.855

95.227

0.399