Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BAM5036_RS08355 Genome accession   NC_020410
Coordinates   1674575..1675825 (+) Length   416 a.a.
NCBI ID   WP_015417497.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1669575..1680825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS08325 (BAM5036_1608) yfmH 1669659..1670945 (+) 1287 WP_015417496.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BAM5036_RS08330 (BAM5036_1609) ymfI 1671005..1671733 (+) 729 WP_015239877.1 elongation factor P 5-aminopentanone reductase -
  BAM5036_RS08335 (BAM5036_1610) - 1671809..1672066 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  BAM5036_RS08340 (BAM5036_1611) - 1672194..1672985 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  BAM5036_RS08345 (BAM5036_1612) - 1673004..1673903 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  BAM5036_RS08350 (BAM5036_1613) pgsA 1673976..1674557 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BAM5036_RS08355 (BAM5036_1614) cinA 1674575..1675825 (+) 1251 WP_015417497.1 competence/damage-inducible protein A Machinery gene
  BAM5036_RS08360 (BAM5036_1615) recA 1675996..1677039 (+) 1044 WP_015417498.1 recombinase RecA Machinery gene
  BAM5036_RS08365 (BAM5036_1616) - 1677206..1678387 (+) 1182 WP_015239879.1 serine hydrolase domain-containing protein -
  BAM5036_RS08370 (BAM5036_1617) rny 1678680..1680239 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45024.30 Da        Isoelectric Point: 5.1492

>NTDB_id=56371 BAM5036_RS08355 WP_015417497.1 1674575..1675825(+) (cinA) [Bacillus velezensis UCMB5036]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKRLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=56371 BAM5036_RS08355 WP_015417497.1 1674575..1675825(+) (cinA) [Bacillus velezensis UCMB5036]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTGAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAGGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment