Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KFZ55_RS00180 Genome accession   NZ_CP074114
Coordinates   37868..39109 (+) Length   413 a.a.
NCBI ID   WP_094244076.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain SNTH-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32868..44109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ55_RS00155 (KFZ55_00155) mscL 32884..33348 (-) 465 WP_094244193.1 large conductance mechanosensitive channel protein MscL -
  KFZ55_RS00160 (KFZ55_00160) - 33554..34822 (+) 1269 WP_094244077.1 pitrilysin family protein -
  KFZ55_RS00165 (KFZ55_00165) - 34815..36113 (+) 1299 WP_014123430.1 pitrilysin family protein -
  KFZ55_RS00170 (KFZ55_00170) - 36210..37091 (+) 882 WP_014123431.1 RodZ domain-containing protein -
  KFZ55_RS00175 (KFZ55_00175) pgsA 37147..37728 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KFZ55_RS00180 (KFZ55_00180) cinA 37868..39109 (+) 1242 WP_094244076.1 competence/damage-inducible protein A Machinery gene
  KFZ55_RS00185 (KFZ55_00185) recA 39223..40266 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  KFZ55_RS00190 (KFZ55_00190) rny 40525..42081 (+) 1557 WP_094244075.1 ribonuclease Y -
  KFZ55_RS00195 (KFZ55_00195) treR 42135..42851 (-) 717 WP_041591733.1 trehalose operon repressor -
  KFZ55_RS00200 (KFZ55_00200) pgmB 42915..43565 (-) 651 WP_094244073.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45557.62 Da        Isoelectric Point: 4.6540

>NTDB_id=563486 KFZ55_RS00180 WP_094244076.1 37868..39109(+) (cinA) [Tetragenococcus halophilus strain SNTH-1]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLAFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGNSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLDQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=563486 KFZ55_RS00180 WP_094244076.1 37868..39109(+) (cinA) [Tetragenococcus halophilus strain SNTH-1]
ATGAAAGCAGAAATCATAGCAGTAGGCACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCTTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACTGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTGGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGCATTTTTTGAAAAACGAGA
ACGACCAATGACAGAAAATAATCGTTTGCAGGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAACTCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTACAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGCACCACAGATAAAAATGATGGAAAACAAAAACTGGATCAAATG
GAAGAAGTAATATTAGATCGTGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTTGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGTAGTG
TTTCTGGTGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACTTACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.019

100

0.53
  cinA Streptococcus mitis NCTC 12261

52.019

100

0.53
  cinA Streptococcus pneumoniae TIGR4

51.781

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.544

100

0.525
  cinA Streptococcus pneumoniae R6

51.544

100

0.525
  cinA Streptococcus pneumoniae D39

51.306

100

0.523
  cinA Streptococcus mutans UA159

50.962

100

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.614

100

0.438