NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	KFQ09_RS12360	Genome accession	NZ_CP074101
Coordinates	2443751..2444437 (+)	Length	228 a.a.
NCBI ID	WP_216942854.1	Uniprot ID	-
Organism	Bacillus sp. FS02
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2438751..2449437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFQ09_RS12335	degS	2438914..2440089 (+)	1176	WP_003213166.1	sensor histidine kinase	Regulator
KFQ09_RS12340	degU	2440154..2440843 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
KFQ09_RS12345	-	2441055..2441897 (+)	843	WP_144683538.1	DegV family protein	-
KFQ09_RS12350	comFA	2442017..2443396 (+)	1380	WP_370648328.1	DEAD/DEAH box helicase	Machinery gene
KFQ09_RS12355	-	2443461..2443754 (+)	294	WP_008348267.1	late competence development ComFB family protein	-
KFQ09_RS12360	comFC	2443751..2444437 (+)	687	WP_216942854.1	ComF family protein	Machinery gene
KFQ09_RS12365	-	2444494..2444913 (+)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
KFQ09_RS12370	flgM	2444993..2445256 (+)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
KFQ09_RS12375	-	2445275..2445757 (+)	483	WP_007499977.1	flagellar protein FlgN	-
KFQ09_RS12380	flgK	2445773..2447293 (+)	1521	WP_216942853.1	flagellar hook-associated protein FlgK	-
KFQ09_RS12385	flgL	2447302..2448213 (+)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
KFQ09_RS12390	-	2448260..2448838 (+)	579	WP_216942851.1	DUF6470 family protein	-
KFQ09_RS12395	fliW	2448867..2449301 (+)	435	WP_025208061.1	flagellar assembly protein FliW	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 26228.75 Da Isoelectric Point: 10.2389

                                >NTDB_id=563275 KFQ09_RS12360 WP_216942854.1 2443751..2444437(+) (comFC) [Bacillus sp. FS02]

MICPICESHFVADFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA

YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH

QRKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 687 bp

                                >NTDB_id=563275 KFQ09_RS12360 WP_216942854.1 2443751..2444437(+) (comFC) [Bacillus sp. FS02]

TTGATTTGTCCAATTTGTGAGAGTCATTTTGTGGCTGATTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT

ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC

AATTGTGTCAAGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT

TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA

TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA

AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT

CAAAGGAAGCAGTCAAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT

CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG

ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(162-226)

Double zinc ribbon domain (DZR_2)

(3-59)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377

Detailed information NTG0563275