Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KFQ09_RS12350 Genome accession   NZ_CP074101
Coordinates   2442017..2443396 (+) Length   459 a.a.
NCBI ID   WP_370648328.1    Uniprot ID   -
Organism   Bacillus sp. FS02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2437017..2448396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS12330 - 2438024..2438692 (-) 669 WP_017357860.1 YigZ family protein -
  KFQ09_RS12335 degS 2438914..2440089 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  KFQ09_RS12340 degU 2440154..2440843 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  KFQ09_RS12345 - 2441055..2441897 (+) 843 WP_144683538.1 DegV family protein -
  KFQ09_RS12350 comFA 2442017..2443396 (+) 1380 WP_370648328.1 DEAD/DEAH box helicase Machinery gene
  KFQ09_RS12355 - 2443461..2443754 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  KFQ09_RS12360 comFC 2443751..2444437 (+) 687 WP_216942854.1 ComF family protein Machinery gene
  KFQ09_RS12365 - 2444494..2444913 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  KFQ09_RS12370 flgM 2444993..2445256 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  KFQ09_RS12375 - 2445275..2445757 (+) 483 WP_007499977.1 flagellar protein FlgN -
  KFQ09_RS12380 flgK 2445773..2447293 (+) 1521 WP_216942853.1 flagellar hook-associated protein FlgK -
  KFQ09_RS12385 flgL 2447302..2448213 (+) 912 WP_008348257.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52467.02 Da        Isoelectric Point: 9.9201

>NTDB_id=563274 KFQ09_RS12350 WP_370648328.1 2442017..2443396(+) (comFA) [Bacillus sp. FS02]
MNLEKALELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNMRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKDTRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=563274 KFQ09_RS12350 WP_370648328.1 2442017..2443396(+) (comFA) [Bacillus sp. FS02]
TTGAATCTGGAAAAAGCATTGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACATGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGACACAAG
ACAAGTTGAATTAACATGGCAGGGGGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATCGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTACCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTCTTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508