Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L6L57_RS08420 Genome accession   NZ_CP091712
Coordinates   1772481..1773908 (-) Length   475 a.a.
NCBI ID   WP_240724729.1    Uniprot ID   -
Organism   Escherichia coli strain KFu014     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1767481..1778908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L57_RS08390 (L6L57_08390) yeeZ 1767536..1768360 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  L6L57_RS08395 (L6L57_08395) yeeY 1768406..1769335 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  L6L57_RS08400 (L6L57_08400) yoeI 1769550..1769612 (+) 63 WP_010723108.1 membrane protein YoeI -
  L6L57_RS08405 (L6L57_08405) plaP 1769602..1770960 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  L6L57_RS08410 (L6L57_08410) tsuA 1771139..1772197 (+) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  L6L57_RS08415 (L6L57_08415) tsuB 1772211..1772438 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  L6L57_RS08420 (L6L57_08420) sbcB 1772481..1773908 (-) 1428 WP_240724729.1 exodeoxyribonuclease I Machinery gene
  L6L57_RS08425 (L6L57_08425) dacD 1774117..1775283 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  L6L57_RS08430 (L6L57_08430) sbmC 1775402..1775875 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  L6L57_RS08435 (L6L57_08435) yeeA 1776073..1777131 (+) 1059 WP_001200888.1 FUSC family protein -
  L6L57_RS08440 (L6L57_08440) tmaR 1777303..1777632 (+) 330 WP_000450409.1 DUF496 family protein -
  L6L57_RS08445 (L6L57_08445) - 1777733..1777915 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  L6L57_RS08450 (L6L57_08450) - 1777969..1778115 (+) 147 Protein_1652 transposase domain-containing protein -
  L6L57_RS08455 (L6L57_08455) - 1778404..1778484 (-) 81 Protein_1653 hypothetical protein -
  L6L57_RS08460 (L6L57_08460) yeeW 1778530..1778724 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=563272 L6L57_RS08420 WP_240724729.1 1772481..1773908(-) (sbcB) [Escherichia coli strain KFu014]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRLEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=563272 L6L57_RS08420 WP_240724729.1 1772481..1773908(-) (sbcB) [Escherichia coli strain KFu014]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTCTCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581