Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KFQ09_RS12340 Genome accession   NZ_CP074101
Coordinates   2440154..2440843 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FS02     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2435154..2445843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS12320 - 2435837..2436904 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  KFQ09_RS12325 - 2436942..2438039 (-) 1098 WP_007499958.1 LCP family protein -
  KFQ09_RS12330 - 2438024..2438692 (-) 669 WP_017357860.1 YigZ family protein -
  KFQ09_RS12335 degS 2438914..2440089 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  KFQ09_RS12340 degU 2440154..2440843 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  KFQ09_RS12345 - 2441055..2441897 (+) 843 WP_144683538.1 DegV family protein -
  KFQ09_RS12350 comFA 2442017..2443396 (+) 1380 WP_370648328.1 DEAD/DEAH box helicase Machinery gene
  KFQ09_RS12355 - 2443461..2443754 (+) 294 WP_008348267.1 late competence development ComFB family protein -
  KFQ09_RS12360 comFC 2443751..2444437 (+) 687 WP_216942854.1 ComF family protein Machinery gene
  KFQ09_RS12365 - 2444494..2444913 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  KFQ09_RS12370 flgM 2444993..2445256 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  KFQ09_RS12375 - 2445275..2445757 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=563273 KFQ09_RS12340 WP_008348273.1 2440154..2440843(+) (degU) [Bacillus sp. FS02]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=563273 KFQ09_RS12340 WP_008348273.1 2440154..2440843(+) (degU) [Bacillus sp. FS02]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996