Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KFZ68_RS00985 Genome accession   NZ_CP074084
Coordinates   204561..206189 (+) Length   542 a.a.
NCBI ID   WP_228125708.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199561..211189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ68_RS00965 (KFZ68_00965) pilM 201691..202689 (+) 999 WP_044174102.1 type IV pilus assembly protein PilM -
  KFZ68_RS00970 (KFZ68_00970) - 202686..203327 (+) 642 WP_065172421.1 PilN domain-containing protein -
  KFZ68_RS00975 (KFZ68_00975) - 203324..203914 (+) 591 WP_068969671.1 type 4a pilus biogenesis protein PilO -
  KFZ68_RS00980 (KFZ68_00980) - 203923..204438 (+) 516 WP_065172419.1 pilus assembly protein PilP -
  KFZ68_RS00985 (KFZ68_00985) pilQ 204561..206189 (+) 1629 WP_228125708.1 type IV pilus secretin PilQ family protein Machinery gene
  KFZ68_RS00990 (KFZ68_00990) aroK 206519..207037 (+) 519 WP_036765246.1 shikimate kinase AroK -
  KFZ68_RS00995 (KFZ68_00995) aroB 207067..208146 (+) 1080 WP_284647891.1 3-dehydroquinate synthase -
  KFZ68_RS01000 (KFZ68_01000) - 208161..209672 (+) 1512 WP_284647892.1 AAA family ATPase -
  KFZ68_RS01005 (KFZ68_01005) dam 209780..210622 (+) 843 WP_086367610.1 adenine-specific DNA-methyltransferase -
  KFZ68_RS01010 (KFZ68_01010) - 210606..210803 (-) 198 WP_086367858.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 59102.73 Da        Isoelectric Point: 4.7466

>NTDB_id=563084 KFZ68_RS00985 WP_228125708.1 204561..206189(+) (pilQ) [Photobacterium damselae strain Pdd1411]
MNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDIFDTAIKDDMLYVLDVVDFATVVRSIETFRTEKG
SKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKTSSTAKAKQGKIDYKGKPISINFQDVPVRNVLQLVAEYNDFNLVVSDT
VQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIA
DLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITALDIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQ
NGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQVAKLGDILLDLELSALQAESKAEIISSPRLVTT
NKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQ
VLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKIITQ

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=563084 KFZ68_RS00985 WP_228125708.1 204561..206189(+) (pilQ) [Photobacterium damselae strain Pdd1411]
ATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAATCGTGGACGAGGCGTGCTCACTGTTCAGTT
AGCCAAACCTCAATCTCTGGTTGATATGCGCCGTTCAGGGAAGCAATTACATATCGATATCTTTGATACCGCGATTAAAG
ATGACATGTTGTATGTTCTCGATGTAGTCGACTTTGCAACGGTTGTTCGTTCTATTGAAACATTTCGCACCGAGAAAGGC
AGTAAGCTGATTCTCAATATGGCTGGCGTGTTTGATTATGATTACCAATTAAAAGGCTCCCGTCTTGAAGTTGTTTTGAA
CGCCCAGAAAAAGAAAACCAGTAGTACTGCCAAGGCTAAGCAAGGCAAAATTGATTATAAAGGTAAGCCCATTTCCATTA
ACTTCCAAGATGTTCCTGTGCGTAACGTACTGCAGTTGGTTGCCGAATATAATGATTTTAATCTCGTGGTTTCCGATACC
GTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTATTTTGCAATCAAAAGGGTT
GGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAATGAGCGTCAAGAGATGGAAG
CTAAACGTAAAGAAGATGAGTTAGCTTCTCTTCGTTCGGAGCTGATTCAAATTAATTACGCTAAAGCAGGAGATATCGCA
GACCTTTTACTCGGAACGAAAGATGGGGTCAGTATGCTATCTCAACGTGGATCTTTGCATGTTGATGAGCGTACTAATGC
CATTATCATCAAAGATATCCCTGAGAGTATTGATAGCATTGAAGAGATTATCACAGCATTAGATATTCCCGTTAAACAGG
TTCAGATAGAAGCTCGTATTGTTACTGTTGATGAGGGGGATATTGACGAGTTAGGGGTACGTTGGGGTGTCGTTAATCAA
AACGGTAGTACAACCATTGGTGGCTCAATTGAAGGTAACCTGGCCAGTTCGGGCTTATTGGGTGATGACGCGACTGTTGA
TGATTTCTTAAATGTAAATTTAGGAGCTATTACTCCAGGGGCATCGAGTATTGCATTTCAGGTGGCAAAACTGGGCGATA
TTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAGTCCTCGATTAGTGACTACC
AATAAAAAAGCGGCCTACATCGAACAAGGTACTGAGATCCCTTATTTAGAAGCGGCGTCCAGTGGTGCGGTATCGGTAGA
CTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCAGATGATAAATTGGTGCTCGATCTGCTGGTCA
CGCAAGATAAAGTAGGGGAAACAGTTGTGACCGGAACCGGAGAAGCGGTCGCTATTGATACTCAACGAATTGGCACGCAA
GTTCTGGTCAATAACGGCGAGACTGTGGTCTTAGGTGGTATCTACCAGCATCAGGTGAATAATTCTGTCCGTAAAGTCCC
TTTGTTGGGTGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGCAAGCGTGAACTGTTGATTT
TCGTCACACCAAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(382-540)

Bacterial type II/III secretion system short domain (Secretin_N)

(227-293)

Secretin and TonB N terminus short domain (STN)

(153-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

63.822

99.446

0.635
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

63.822

99.446

0.635
  pilQ Vibrio campbellii strain DS40M4

61.314

100

0.62
  pilQ Legionella pneumophila strain Lp02

42.647

100

0.428
  pilQ Legionella pneumophila strain ERS1305867

42.647

100

0.428
  pilQ Pseudomonas aeruginosa PAK

40.787

100

0.421
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.419
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.419
  comQ Acinetobacter baylyi ADP1

40.248

100

0.419