Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KDJ56_RS09980 Genome accession   NZ_CP073708
Coordinates   1946542..1947792 (+) Length   416 a.a.
NCBI ID   WP_198829718.1    Uniprot ID   A0A7T5EP92
Organism   Brevibacillus composti strain FJAT-54424     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1941542..1952792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ56_RS09955 (KDJ56_09955) - 1942349..1942618 (+) 270 WP_198829713.1 DUF3243 domain-containing protein -
  KDJ56_RS09960 (KDJ56_09960) - 1942742..1943521 (+) 780 WP_198829714.1 YmfK family protein -
  KDJ56_RS09965 (KDJ56_09965) - 1943539..1944450 (+) 912 WP_198829715.1 helix-turn-helix domain-containing protein -
  KDJ56_RS09970 (KDJ56_09970) rimO 1944565..1945911 (+) 1347 WP_198829716.1 30S ribosomal protein S12 methylthiotransferase RimO -
  KDJ56_RS09975 (KDJ56_09975) pgsA 1945912..1946487 (+) 576 WP_198829717.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KDJ56_RS09980 (KDJ56_09980) cinA 1946542..1947792 (+) 1251 WP_198829718.1 competence/damage-inducible protein A Machinery gene
  KDJ56_RS09985 (KDJ56_09985) - 1947789..1949375 (+) 1587 WP_198829719.1 DEAD/DEAH box helicase -
  KDJ56_RS09990 (KDJ56_09990) recA 1949630..1950688 (+) 1059 WP_198829720.1 recombinase RecA Machinery gene
  KDJ56_RS09995 (KDJ56_09995) - 1950753..1951394 (+) 642 WP_198829721.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44956.46 Da        Isoelectric Point: 5.0971

>NTDB_id=560024 KDJ56_RS09980 WP_198829718.1 1946542..1947792(+) (cinA) [Brevibacillus composti strain FJAT-54424]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEIGIGVYFHTVVGDNAERLMRTIELAASRSDLIIFSGGLGPTQDDLTKET
VASYIGAGLVTDRVAMDRIEAFFHQRGTVMTQNNRKQALVFDRGDVFPNDTGMAPGMAAEHEGRTFVLLPGPPSELYPMV
ERYVMPYLINLLPERQVFHSHVLRFYGIGESALEERLLDLIEGQDNPTIAPYAKEFEVTLRITARAKTMQEAEELIAPVE
SEIRNRLGAYIYAEGETSLHEVLVDELAQSGRTIACAESCTGGRTASLITSVPGSSAVMRGGIVCYTNEAKHDLVGIPQE
VLDSAGAISEETARLLAENIRQKLGASCGISVTGVAGPDPSEGKPVGLVYIGVAVEGLPTVVKEVRLAGSRHAIVSRAAK
FALFYALQRLKKGERI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=560024 KDJ56_RS09980 WP_198829718.1 1946542..1947792(+) (cinA) [Brevibacillus composti strain FJAT-54424]
ATGAAAGCGGAGATTATTGCTGTAGGGACAGAGCTTCTGCTGGGACAAATCGCCAACACGAACGCGCAGTTTTTATCGCA
AAAGCTGGCGGAGATTGGCATCGGCGTCTATTTCCACACGGTTGTGGGCGATAACGCCGAACGTCTGATGCGGACCATCG
AGCTGGCGGCAAGCCGTTCGGATCTGATTATTTTTTCCGGCGGATTGGGTCCGACGCAGGATGATCTGACCAAGGAAACG
GTGGCATCGTACATCGGCGCCGGATTGGTGACAGACCGGGTGGCGATGGATCGGATCGAGGCGTTTTTTCACCAGAGGGG
CACGGTGATGACGCAAAATAATCGCAAGCAAGCGCTCGTCTTTGACCGTGGAGACGTATTCCCGAACGATACGGGGATGG
CTCCGGGTATGGCCGCCGAGCACGAGGGCCGCACCTTTGTCCTCTTGCCCGGTCCCCCGAGCGAGCTGTATCCGATGGTG
GAGCGGTACGTCATGCCTTACCTGATCAATCTGTTGCCAGAGCGGCAGGTGTTTCACTCCCATGTCCTCCGTTTTTACGG
AATTGGCGAGTCGGCCCTGGAAGAGCGGCTGCTGGATCTGATCGAAGGGCAGGATAATCCGACGATCGCCCCTTACGCCA
AAGAATTCGAGGTCACGCTTCGCATTACGGCTCGGGCCAAAACCATGCAGGAAGCGGAAGAGCTGATCGCTCCGGTGGAG
TCTGAGATCCGAAACCGGCTCGGAGCGTATATCTATGCGGAGGGAGAGACCTCTCTGCATGAAGTGCTGGTGGACGAACT
GGCACAGTCAGGGCGGACCATTGCCTGCGCCGAGAGCTGCACAGGCGGAAGGACAGCTTCTCTGATCACTTCCGTGCCCG
GCAGCTCGGCTGTCATGCGCGGAGGCATCGTCTGCTACACCAACGAGGCAAAGCACGATCTGGTCGGCATCCCGCAAGAG
GTATTGGACAGCGCGGGAGCGATCAGCGAAGAAACAGCCCGTCTGCTCGCCGAGAACATTCGGCAGAAGCTGGGGGCTTC
CTGCGGAATTTCCGTCACGGGCGTCGCAGGGCCTGATCCTTCCGAAGGAAAACCGGTGGGACTTGTTTACATCGGCGTGG
CAGTCGAAGGATTGCCGACCGTCGTAAAGGAAGTCCGGCTGGCTGGCAGCAGACATGCGATTGTGAGTCGCGCTGCCAAA
TTTGCTTTATTCTACGCGCTTCAGCGACTAAAGAAAGGTGAACGTATATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EP92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.365

98.798

0.498
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.466
  cinA Streptococcus mitis SK321

46.062

100

0.464
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus mutans UA159

48.148

90.865

0.437
  cinA Streptococcus suis isolate S10

42.278

94.952

0.401