Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KAI37_RS09945 Genome accession   NZ_CP073683
Coordinates   2247954..2249222 (+) Length   422 a.a.
NCBI ID   WP_220031150.1    Uniprot ID   -
Organism   Paenibacillus sp. S25     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242954..2254222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI37_RS09915 (KAI37_02004) - 2243813..2244067 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  KAI37_RS09920 (KAI37_02005) - 2244295..2245068 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  KAI37_RS09925 (KAI37_02006) - 2245099..2246175 (+) 1077 WP_220031148.1 RodZ domain-containing protein -
  KAI37_RS09930 (KAI37_02007) - 2246260..2246424 (+) 165 WP_023988236.1 hypothetical protein -
  KAI37_RS09935 (KAI37_02008) - 2246569..2247060 (+) 492 WP_025722076.1 YajQ family cyclic di-GMP-binding protein -
  KAI37_RS09940 (KAI37_02009) pgsA 2247271..2247858 (+) 588 WP_220031149.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KAI37_RS09945 (KAI37_02010) cinA 2247954..2249222 (+) 1269 WP_220031150.1 competence/damage-inducible protein A Machinery gene
  KAI37_RS09950 (KAI37_02011) recA 2249464..2250525 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  KAI37_RS09955 (KAI37_02012) - 2250721..2251470 (+) 750 WP_220031151.1 RecX family transcriptional regulator -
  KAI37_RS09960 (KAI37_02013) rny 2251844..2253388 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46315.25 Da        Isoelectric Point: 4.7159

>NTDB_id=559919 KAI37_RS09945 WP_220031150.1 2247954..2249222(+) (cinA) [Paenibacillus sp. S25]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKSGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=559919 KAI37_RS09945 WP_220031150.1 2247954..2249222(+) (cinA) [Paenibacillus sp. S25]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGTCAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATCGGAATCGATGTATATTTTCAGACTGTAGTTGGCGATAACATAGATCGGCTTCAGGAAGCAATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGACCGACTCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGATAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGCGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCAAGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAAGAAATGCCAATTTATTCAAAAATGTTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAAAGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATCATGGACAGTGATTTTGGACTTTCAGTTACTGGTGTTGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGACTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412