Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KAI36_RS10430 Genome accession   NZ_CP073682
Coordinates   2331363..2332631 (+) Length   422 a.a.
NCBI ID   WP_220027666.1    Uniprot ID   -
Organism   Paenibacillus sp. S02     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2326363..2337631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI36_RS10400 (KAI36_02096) - 2327162..2327416 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  KAI36_RS10405 (KAI36_02097) - 2327644..2328417 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  KAI36_RS10410 (KAI36_02098) - 2328448..2329584 (+) 1137 WP_220027665.1 RodZ domain-containing protein -
  KAI36_RS10415 (KAI36_02099) - 2329669..2329833 (+) 165 WP_023988236.1 hypothetical protein -
  KAI36_RS10420 (KAI36_02100) - 2329978..2330469 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  KAI36_RS10425 (KAI36_02101) pgsA 2330680..2331267 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KAI36_RS10430 (KAI36_02102) cinA 2331363..2332631 (+) 1269 WP_220027666.1 competence/damage-inducible protein A Machinery gene
  KAI36_RS10435 (KAI36_02103) recA 2332871..2333932 (+) 1062 WP_220028091.1 recombinase RecA Machinery gene
  KAI36_RS10440 (KAI36_02104) - 2334128..2334877 (+) 750 WP_220027667.1 RecX family transcriptional regulator -
  KAI36_RS10445 (KAI36_02105) rny 2335252..2336796 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46314.27 Da        Isoelectric Point: 4.8277

>NTDB_id=559888 KAI36_RS10430 WP_220027666.1 2331363..2332631(+) (cinA) [Paenibacillus sp. S02]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
NDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLGGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=559888 KAI36_RS10430 WP_220027666.1 2331363..2332631(+) (cinA) [Paenibacillus sp. S02]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATCGGAATCGATGTATATTTTCAGACTGTAGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCGGGCGGTCTGGGACCGACTCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATTGATCGTCTTGCAATGGACAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCACTTTCTATCGAAGGCGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTTAAACCCATGTTT
GCAAACCAGGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGTGGTGAGGAGATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCTAGCGAAAGTGAAGCATTAATTAAGCTGACGGCT
ACAGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAACGTGCCT
AATGATTATTTGGAAGGGGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCCGGGTATTCGGAACGGAAGCCAGTTGGTCTGG
TGTATATTGGCATTGCTGAGCGCGACAAAGAAACGGAAGTACATGAGCTGAGACTGGGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATTCTGTACAGATTGTGGCGCAGACTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.488

97.156

0.491
  cinA Streptococcus pneumoniae TIGR4

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

50

97.156

0.486
  cinA Streptococcus pneumoniae Rx1

50

97.156

0.486
  cinA Streptococcus pneumoniae R6

50

97.156

0.486
  cinA Streptococcus pneumoniae D39

49.756

97.156

0.483
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

44.389

95.024

0.422