Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KC397_RS12600 Genome accession   NZ_CP073273
Coordinates   2678654..2679880 (+) Length   408 a.a.
NCBI ID   WP_212570743.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673654..2684880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS12575 (KC397_12575) fldB 2674144..2674665 (+) 522 WP_020430452.1 flavodoxin FldB -
  KC397_RS12580 (KC397_12580) ampD 2674670..2675221 (-) 552 WP_020331981.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KC397_RS12585 (KC397_12585) nadC 2675374..2676261 (+) 888 WP_212570737.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KC397_RS12590 (KC397_12590) - 2676492..2676923 (+) 432 WP_212570739.1 pilin -
  KC397_RS12595 (KC397_12595) pilB 2676930..2678618 (+) 1689 WP_212570741.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KC397_RS12600 (KC397_12600) pilC 2678654..2679880 (+) 1227 WP_212570743.1 type II secretion system F family protein Machinery gene
  KC397_RS12605 (KC397_12605) pilD 2679932..2680801 (+) 870 WP_212570745.1 A24 family peptidase Machinery gene
  KC397_RS12610 (KC397_12610) coaE 2680804..2681412 (+) 609 WP_020332197.1 dephospho-CoA kinase -
  KC397_RS12615 (KC397_12615) zapD 2681445..2682185 (+) 741 WP_020332196.1 cell division protein ZapD -
  KC397_RS12620 (KC397_12620) yacG 2682240..2682437 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  KC397_RS12625 (KC397_12625) parC 2682488..2684761 (-) 2274 WP_212570746.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44652.88 Da        Isoelectric Point: 10.5318

>NTDB_id=558728 KC397_RS12600 WP_212570743.1 2678654..2679880(+) (pilC) [Vibrio fluvialis strain 19-VB00936]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLGLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDILNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=558728 KC397_RS12600 WP_212570743.1 2678654..2679880(+) (pilC) [Vibrio fluvialis strain 19-VB00936]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCAGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCAATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGCACTGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGTGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGGGCTTGGTGTTTGGC
ATCAAAGCAGCACGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCAGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATACTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.765

100

0.868
  pilC Vibrio campbellii strain DS40M4

72.861

100

0.73
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.103

97.794

0.402
  pilC Acinetobacter baylyi ADP1

41.058

97.304

0.4
  pilC Pseudomonas stutzeri DSM 10701

39.899

97.059

0.387
  pilG Neisseria gonorrhoeae MS11

39.348

97.794

0.385
  pilG Neisseria meningitidis 44/76-A

38.847

97.794

0.38