Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KCX77_RS09535 Genome accession   NZ_CP073265
Coordinates   1852210..1853460 (+) Length   416 a.a.
NCBI ID   WP_212064738.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1847210..1858460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS09505 (KCX77_09505) - 1847293..1848579 (+) 1287 WP_212064578.1 pitrilysin family protein -
  KCX77_RS09510 (KCX77_09510) - 1848636..1849364 (+) 729 WP_010788647.1 SDR family oxidoreductase -
  KCX77_RS09515 (KCX77_09515) - 1849445..1849702 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  KCX77_RS09520 (KCX77_09520) - 1849832..1850623 (+) 792 WP_003328872.1 YmfK family protein -
  KCX77_RS09525 (KCX77_09525) - 1850642..1851559 (+) 918 WP_010788648.1 RodZ family helix-turn-helix domain-containing protein -
  KCX77_RS09530 (KCX77_09530) pgsA 1851610..1852191 (+) 582 WP_212064579.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KCX77_RS09535 (KCX77_09535) cinA 1852210..1853460 (+) 1251 WP_212064738.1 competence/damage-inducible protein A Machinery gene
  KCX77_RS09540 (KCX77_09540) recA 1853632..1854675 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  KCX77_RS09545 (KCX77_09545) - 1854962..1856191 (+) 1230 WP_212064580.1 serine hydrolase domain-containing protein -
  KCX77_RS09550 (KCX77_09550) rny 1856450..1858012 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45201.52 Da        Isoelectric Point: 4.8535

>NTDB_id=558630 KCX77_RS09535 WP_212064738.1 1852210..1853460(+) (cinA) [Bacillus atrophaeus strain CNY01]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIASVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLIEHEARLYMMLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=558630 KCX77_RS09535 WP_212064738.1 1852210..1853460(+) (cinA) [Bacillus atrophaeus strain CNY01]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTTTTACTCGGTCAGATCACCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAGTGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGATAGAGCACGAAGCCCGTCTTTATATGATGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAACCGCTTCTTCTTGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATAGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACTAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGTTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACCGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTTAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

88.462

100

0.885
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.553

90.385

0.385