Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCG54_RS02225 Genome accession   NZ_CP073115
Coordinates   449607..451103 (-) Length   498 a.a.
NCBI ID   WP_254324522.1    Uniprot ID   A0A9X9HUQ6
Organism   Neisseria subflava strain TT0077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 444607..456103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02195 (KCG54_02215) comE 445738..446025 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG54_RS02200 (KCG54_02220) comP 446210..446704 (+) 495 WP_254324517.1 type IV pilin protein Machinery gene
  KCG54_RS02205 (KCG54_02225) - 446784..447608 (-) 825 WP_254324518.1 undecaprenyl-diphosphate phosphatase -
  KCG54_RS02210 (KCG54_02230) dsbA1 447653..448294 (-) 642 WP_254324519.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG54_RS02215 - 448306..448713 (-) 408 WP_254324520.1 SPOR domain-containing protein -
  KCG54_RS02220 - 448830..449453 (-) 624 WP_254324521.1 hypothetical protein -
  KCG54_RS02225 (KCG54_02240) comM 449607..451103 (-) 1497 WP_254324522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG54_RS02230 (KCG54_02245) - 451117..451437 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG54_RS02235 (KCG54_02250) - 451563..452627 (-) 1065 WP_254324523.1 DUF1176 domain-containing protein -
  KCG54_RS02240 (KCG54_02255) metK 452799..453968 (-) 1170 WP_254324524.1 methionine adenosyltransferase -
  KCG54_RS02245 (KCG54_02260) - 454361..455242 (+) 882 WP_254324525.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53754.79 Da        Isoelectric Point: 7.3360

>NTDB_id=558025 KCG54_RS02225 WP_254324522.1 449607..451103(-) (comM) [Neisseria subflava strain TT0077]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLSQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGACSL
GEVAAHLNGIEPLTQTECKLTQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTAARKIQYNRQGKVNAELSVGELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=558025 KCG54_RS02225 WP_254324522.1 449607..451103(-) (comM) [Neisseria subflava strain TT0077]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCTGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGACTTTCCCGCAAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTGGGCATTCTTGCCGCTTCGGGACAAATTAATCCTGAAAAGCTCTCGCAATATGAGTTTGC
CGGAGAATTGGCACTGTCCGGCCTGCTGCGTCCCGTACGTGGCGCGCTGGCTATGGCATGGCAGGGAATGCAGGCAGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGTATCGCGGTTTATGGCGCGTGTTCTTTA
GGCGAAGTGGCCGCGCATTTAAACGGTATCGAACCGTTGACACAAACTGAATGCAAGCTGACGCAAAGGCCGTCTGAACA
AAGTAAAATTCCTGATTTAGCCGATGTTAAAGGCCAACATACCGCCCGCCTTGCTTTGGAAATTGCAGCGGCAGGTGGGC
ACAGCCTGCTGATGATGGGCCCTCCGGGTACGGGCAAATCCATGCTTTCGCAACGTTTGCCCGGTATCCTCCCACCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCATTGCGTTCGCTCCTACCCAACCATCAACAGCAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCGCCAGCTCGGCTGCCATGGTGGGTGGCGGTTCAGACCCACGTCCGGGCGAAATCTCAT
TGGCACACCACGGAGTGTTGTTTTTAGACGAATTGCCCGAATTTGACCGTAAAGTATTAGAAGTGTTGCGCGAGCCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCTGTTTATCCGGCCAAGTTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTTGGTCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAATTGATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCGCCGCGCGCAAAATCCAATACAACAGACAAGGCAAAGT
TAATGCAGAACTGAGTGTCGGCGAGCTCGATGGCAAAGCCCGTATTCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TTGAAAAACTGTCCCTTTCCGCACGAAGTTTCCACCGCATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGGGAC
GAAGAAGTCAGCAAAACACATGTGATGAAAGCCATCGGCTTCCGTCGCGCTCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Legionella pneumophila str. Paris

46.68

100

0.48
  comM Legionella pneumophila strain ERS1305867

46.68

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446