Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG54_RS02195 Genome accession   NZ_CP073115
Coordinates   445738..446025 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain TT0077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440738..451025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02195 (KCG54_02215) comE 445738..446025 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG54_RS02200 (KCG54_02220) comP 446210..446704 (+) 495 WP_254324517.1 type IV pilin protein Machinery gene
  KCG54_RS02205 (KCG54_02225) - 446784..447608 (-) 825 WP_254324518.1 undecaprenyl-diphosphate phosphatase -
  KCG54_RS02210 (KCG54_02230) dsbA1 447653..448294 (-) 642 WP_254324519.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG54_RS02215 - 448306..448713 (-) 408 WP_254324520.1 SPOR domain-containing protein -
  KCG54_RS02220 - 448830..449453 (-) 624 WP_254324521.1 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=558022 KCG54_RS02195 WP_036472233.1 445738..446025(+) (comE) [Neisseria subflava strain TT0077]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558022 KCG54_RS02195 WP_036472233.1 445738..446025(+) (comE) [Neisseria subflava strain TT0077]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCTGTTTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTAGAATACCGCCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATTGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4