Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG54_RS02210 Genome accession   NZ_CP073115
Coordinates   447653..448294 (-) Length   213 a.a.
NCBI ID   WP_254324519.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442653..453294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02195 (KCG54_02215) comE 445738..446025 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG54_RS02200 (KCG54_02220) comP 446210..446704 (+) 495 WP_254324517.1 type IV pilin protein Machinery gene
  KCG54_RS02205 (KCG54_02225) - 446784..447608 (-) 825 WP_254324518.1 undecaprenyl-diphosphate phosphatase -
  KCG54_RS02210 (KCG54_02230) dsbA1 447653..448294 (-) 642 WP_254324519.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG54_RS02215 - 448306..448713 (-) 408 WP_254324520.1 SPOR domain-containing protein -
  KCG54_RS02220 - 448830..449453 (-) 624 WP_254324521.1 hypothetical protein -
  KCG54_RS02225 (KCG54_02240) comM 449607..451103 (-) 1497 WP_254324522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG54_RS02230 (KCG54_02245) - 451117..451437 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG54_RS02235 (KCG54_02250) - 451563..452627 (-) 1065 WP_254324523.1 DUF1176 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23804.64 Da        Isoelectric Point: 10.0726

>NTDB_id=558024 KCG54_RS02210 WP_254324519.1 447653..448294(-) (dsbA1) [Neisseria subflava strain TT0077]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLNRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMSEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFESKKLLQAYNSPAATSAAAKM
KQLTETYRIENTPTVIVGGKYKVNFNGTDWKAGMKTIDELIVKVRREQSSKPI

Nucleotide


Download         Length: 642 bp        

>NTDB_id=558024 KCG54_RS02210 WP_254324519.1 447653..448294(-) (dsbA1) [Neisseria subflava strain TT0077]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCACAGGCTGCTACCGAAGG
CGTGGACTATACTGTCCTCAATCGCCCTATTCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCAGTTTTGTTGCAACATAGCAAAACCTTTGCCAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGTCTGAAATGTTGGGTTTGGCCAAGGTTGCCGCAGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGCTCATGGGTGG
GTAAACAAACGAGTTTTGAAAGTAAAAAACTGCTTCAAGCCTACAACAGTCCTGCTGCCACATCGGCTGCTGCAAAAATG
AAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGACTGGAAAGCCGGTATGAAAACCATAGATGAGCTCATCGTCAAAGTTCGCCGCGAACAATCCTCAAAACCAATTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.824

87.793

0.516
  dsbA2 Neisseria meningitidis MC58

58.47

85.915

0.502