Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG54_RS02200 Genome accession   NZ_CP073115
Coordinates   446210..446704 (+) Length   164 a.a.
NCBI ID   WP_254324517.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441210..451704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02195 (KCG54_02215) comE 445738..446025 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG54_RS02200 (KCG54_02220) comP 446210..446704 (+) 495 WP_254324517.1 type IV pilin protein Machinery gene
  KCG54_RS02205 (KCG54_02225) - 446784..447608 (-) 825 WP_254324518.1 undecaprenyl-diphosphate phosphatase -
  KCG54_RS02210 (KCG54_02230) dsbA1 447653..448294 (-) 642 WP_254324519.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG54_RS02215 - 448306..448713 (-) 408 WP_254324520.1 SPOR domain-containing protein -
  KCG54_RS02220 - 448830..449453 (-) 624 WP_254324521.1 hypothetical protein -
  KCG54_RS02225 (KCG54_02240) comM 449607..451103 (-) 1497 WP_254324522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG54_RS02230 (KCG54_02245) - 451117..451437 (-) 321 WP_003684455.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18173.24 Da        Isoelectric Point: 10.1969

>NTDB_id=558023 KCG54_RS02200 WP_254324517.1 446210..446704(+) (comP) [Neisseria subflava strain TT0077]
MYLKAFDRKRDRATVQRGYSLIQLLVVMLLVSILATAAFTVYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFGA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=558023 KCG54_RS02200 WP_254324517.1 446210..446704(+) (comP) [Neisseria subflava strain TT0077]
ATGTACTTAAAAGCATTTGACAGAAAACGGGATAGGGCAACTGTGCAGAGGGGCTACTCCTTGATACAGCTGCTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGACGGCGGCCTTTACGGTCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CTCATGCCGCACTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAATGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAA
CCATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(42-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

98.148

98.78

0.97
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451