Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCG52_RS03660 Genome accession   NZ_CP073114
Coordinates   771357..772853 (+) Length   498 a.a.
NCBI ID   WP_254345089.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 766357..777853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03640 (KCG52_03620) - 767233..768114 (-) 882 WP_254345084.1 lysophospholipid acyltransferase family protein -
  KCG52_RS03645 (KCG52_03625) metK 768507..769676 (+) 1170 WP_049351011.1 methionine adenosyltransferase -
  KCG52_RS03650 (KCG52_03630) - 769846..770910 (+) 1065 WP_254345086.1 DUF1176 domain-containing protein -
  KCG52_RS03655 (KCG52_03635) - 771035..771343 (+) 309 WP_254345088.1 accessory factor UbiK family protein -
  KCG52_RS03660 (KCG52_03640) comM 771357..772853 (+) 1497 WP_254345089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG52_RS03665 (KCG52_03645) - 773008..774117 (+) 1110 WP_254345091.1 SPOR domain-containing protein -
  KCG52_RS03670 (KCG52_03650) dsbA1 774129..774770 (+) 642 WP_254345093.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG52_RS03675 (KCG52_03655) - 774815..775639 (+) 825 WP_254345095.1 undecaprenyl-diphosphate phosphatase -
  KCG52_RS03680 (KCG52_03660) comP 775703..776116 (-) 414 WP_254345472.1 type IV pilin protein Machinery gene
  KCG52_RS03685 (KCG52_03665) comE 776380..776667 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53804.92 Da        Isoelectric Point: 7.8332

>NTDB_id=557988 KCG52_RS03660 WP_254345089.1 771357..772853(+) (comM) [Neisseria subflava strain HP0048]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVATHLNDIEPLTQTECKLPQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESIARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAAVLKRVTAARKIQYGRQGKVNAELSVSELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=557988 KCG52_RS03660 WP_254345089.1 771357..772853(+) (comM) [Neisseria subflava strain HP0048]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAACGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCCGCCATCA
TCCAAAGCGGCTTTGACTTCCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCCAAAGAATCCGGCCGT
TTCGATTTACCGATTGCCTTGGGCATTCTTGCCGCATCGGGACAAATCAACCCTGAAAAGCTCGCACAATATGAGTTTGC
CGGAGAATTGGCGCTATCCGGCTTGCTGCGTCCCGTACGCGGCGCGCTGGCCATGGCATGGCAGGGAATGCAGGCCGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGTATCGCGGTTTATGGCGCGCGTTCTTTG
GGCGAAGTGGCCACCCATTTAAACGACATCGAACCGTTGACACAAACCGAATGCAAACTGCCACAAAGGCCGTCTGAACA
AAGTAAAATACCTGATTTAGCCGATGTCAAAGGCCAACATACCGCCCGCCTCGCCTTGGAAATCGCCGCGGCAGGCGGAC
ACAGCCTGCTGATGATGGGCCCTCCGGGAACGGGCAAGTCCATGCTTTCGCAACGTTTGCCCGGTATCCTTCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTCTGGGCATTGCGTTCGCTTCTGCCCAACCATCAACAGCAACTCGACAGCAACCGCCC
TTTCCGCAGTCCCCACCACAGCGCCAGCTCGGCCGCCATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGTGAAATTTCAT
TGGCGCACCACGGTGTGTTGTTTTTAGACGAATTGCCTGAGTTTGACCGTAAAGTATTGGAAGTGTTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCCGTTTATCCGGCCAAGTTCCAGCTCGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTCGGTCATCCGTCCAAACCTTGTCGCTGCACGCCTGAAAGCATCGCCCGTTATCGAAGCA
AAATTTCAGGGCCATTACTCGACCGCATTGATTTAACCATCGAAGTCCCCAGCCTTTCCGCCGCCGAGCTGATGCAACAA
GAAGCCGGCGAATCCAGTGCCGCCGTATTAAAACGCGTTACCGCCGCGCGCAAAATCCAATACGGCCGACAAGGCAAAGT
TAATGCCGAATTGAGTGTCAGCGAACTCGACGGCAAAGCCCGTATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TCGAAAAACTGTCCCTTTCCGCTCGAAGCTTCCACCGCATCATGCGCGTTGCCCGTACGCTGGCTGATTTGGCAGGCGAT
GAAGAAGTCAGTAAAACCCATGTGATGAAAGCCATCGGTTTCCGTCGCGCCCTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

51.509

99.799

0.514
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Haemophilus influenzae Rd KW20

49.499

100

0.496
  comM Legionella pneumophila str. Paris

47.327

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.327

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

100

0.44