Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG52_RS03670 Genome accession   NZ_CP073114
Coordinates   774129..774770 (+) Length   213 a.a.
NCBI ID   WP_254345093.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 775703..784008 774129..774770 flank 933


Gene organization within MGE regions


Location: 774129..784008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03670 (KCG52_03650) dsbA1 774129..774770 (+) 642 WP_254345093.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG52_RS03675 (KCG52_03655) - 774815..775639 (+) 825 WP_254345095.1 undecaprenyl-diphosphate phosphatase -
  KCG52_RS03680 (KCG52_03660) comP 775703..776116 (-) 414 WP_254345472.1 type IV pilin protein Machinery gene
  KCG52_RS03685 (KCG52_03665) comE 776380..776667 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS03715 (KCG52_03695) - 782779..784008 (+) 1230 WP_254345097.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23722.49 Da        Isoelectric Point: 9.7717

>NTDB_id=557989 KCG52_RS03670 WP_254345093.1 774129..774770(+) (dsbA1) [Neisseria subflava strain HP0048]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKLAAAVNLSGLKYQANPVIFTAVYEQKINLADANVFRTWVGKQTSFDSKKLLQAYNNPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGSDWKAGMKTIDELIIKVRHEQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=557989 KCG52_RS03670 WP_254345093.1 774129..774770(+) (dsbA1) [Neisseria subflava strain HP0048]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAGGCTGCTACCGAAGG
CGTGGACTATACCGTTCTTAGTCGCCCTATCCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTGGGCTTGGCTAAATTAGCCGCTGCCGTCAATCTTTCAGGTTTAAAATATCA
GGCCAATCCAGTCATCTTCACAGCCGTTTACGAACAGAAGATTAACTTGGCTGATGCAAATGTATTCCGCACATGGGTCG
GTAAACAGACAAGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAACCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATTGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TAGCGACTGGAAAGCCGGTATGAAAACCATAGACGAACTCATCATTAAAGTTCGCCACGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.893

87.793

0.526
  dsbA2 Neisseria meningitidis MC58

59.563

85.915

0.512