Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG52_RS03685 Genome accession   NZ_CP073114
Coordinates   776380..776667 (-) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria subflava strain HP0048     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 775703..784008 776380..776667 within 0


Gene organization within MGE regions


Location: 775703..784008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03680 (KCG52_03660) comP 775703..776116 (-) 414 WP_254345472.1 type IV pilin protein Machinery gene
  KCG52_RS03685 (KCG52_03665) comE 776380..776667 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS03715 (KCG52_03695) - 782779..784008 (+) 1230 WP_254345097.1 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=557991 KCG52_RS03685 WP_004520163.1 776380..776667(-) (comE) [Neisseria subflava strain HP0048]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=557991 KCG52_RS03685 WP_004520163.1 776380..776667(-) (comE) [Neisseria subflava strain HP0048]
ATGAAGAAATTTTTATTTGGTGTATTTGCCGCCGTGTGTACGGCATTCTCTTTGGCCGCCGTGAACGTCAATACGGCCTC
TTCTGCGGAACTGGAGGCATTGCCGGGTATCGGTCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474