Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG52_RS03680 Genome accession   NZ_CP073114
Coordinates   775703..776116 (-) Length   137 a.a.
NCBI ID   WP_254345472.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 775703..784008 775703..776116 within 0


Gene organization within MGE regions


Location: 775703..784008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03680 (KCG52_03660) comP 775703..776116 (-) 414 WP_254345472.1 type IV pilin protein Machinery gene
  KCG52_RS03685 (KCG52_03665) comE 776380..776667 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS03715 (KCG52_03695) - 782779..784008 (+) 1230 WP_254345097.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14980.44 Da        Isoelectric Point: 9.6523

>NTDB_id=557990 KCG52_RS03680 WP_254345472.1 775703..776116(-) (comP) [Neisseria subflava strain HP0048]
MLLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECRPFMG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=557990 KCG52_RS03680 WP_254345472.1 775703..776116(-) (comP) [Neisseria subflava strain HP0048]
ATGCTGCTGGTTTCGATCTTGGCAACGGCGGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
GCATGCAGCGTTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAATTGCCGGTGAAGGAGGCGGGTGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGTATCCTGGAGGGG
AAGTTTACTTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGCGAGGAGATATTTAGGGGTAATGATGCGGAGTGTCGGC
CTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

98.54

100

0.985
  comP Neisseria meningitidis 8013

50.37

98.54

0.496
  comP Neisseria gonorrhoeae MS11

50.376

97.08

0.489