Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KBU60_RS15340 Genome accession   NZ_CP073068
Coordinates   3278580..3279692 (-) Length   370 a.a.
NCBI ID   WP_140123174.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3273580..3284692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS15310 (KBU60_15310) hemF 3274041..3274958 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  KBU60_RS15315 (KBU60_15315) - 3275006..3275563 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  KBU60_RS15320 (KBU60_15320) purE 3275763..3276248 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  KBU60_RS15325 (KBU60_15325) - 3276253..3277380 (+) 1128 WP_161608866.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KBU60_RS15330 (KBU60_15330) - 3277450..3278019 (-) 570 WP_025442383.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  KBU60_RS15335 (KBU60_15335) - 3278098..3278577 (-) 480 WP_005461440.1 DUF494 family protein -
  KBU60_RS15340 (KBU60_15340) dprA 3278580..3279692 (-) 1113 WP_140123174.1 DNA-processing protein DprA Machinery gene
  KBU60_RS15345 (KBU60_15345) - 3279676..3280770 (-) 1095 WP_025793167.1 LysM peptidoglycan-binding domain-containing protein -
  KBU60_RS15350 (KBU60_15350) def 3280909..3281427 (+) 519 WP_005461416.1 peptide deformylase -
  KBU60_RS15355 (KBU60_15355) fmt 3281461..3282408 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  KBU60_RS15360 (KBU60_15360) rsmB 3282489..3283772 (+) 1284 WP_025610299.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39884.52 Da        Isoelectric Point: 6.4133

>NTDB_id=557670 KBU60_RS15340 WP_140123174.1 3278580..3279692(-) (dprA) [Vibrio parahaemolyticus strain FB-11]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIISSSSEQLYQLGLTNKQLQAWASVDKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=557670 KBU60_RS15340 WP_140123174.1 3278580..3279692(-) (dprA) [Vibrio parahaemolyticus strain FB-11]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGCTGCAAGCTTGGGCTTCGGTCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTCGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAATCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTTGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

85.405

100

0.854
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.697

91.081

0.416
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376