Detailed information NTG0557178

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KBV71_RS02910
• Genome accession: NZ_CP072990
• Coordinates: 683461..684720 (-)
• Length: 419 a.a.
• NCBI ID: WP_242786516.1
• Uniprot ID: -
• Organism: Xanthomonas translucens pv. translucens strain CIX95
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	685013..685978	683461..684720	flank	293

Gene organization within MGE regions

Location: 683461..685978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBV71_RS02910 (KBV71_02870)	pilC	683461..684720 (-)	1260	WP_242786516.1	type II secretion system F family protein	Machinery gene
KBV71_RS02915 (KBV71_02875)	-	685013..685978 (+)	966	WP_065898826.1	IS1595 family transposase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45828.28 Da
• Isoelectric Point: 10.1958

>NTDB_id=557178 KBV71_RS02910 WP_242786516.1 683461..684720(-) (pilC) [Xanthomonas translucens pv. translucens strain CIX95]
MSATRRAAPKQPVARNTSQLLPFLWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVSSLEIIASGQKNVRMKNMVNQVRLDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKESIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEEVFKGFGAELPVFTQMIVAASRMMVAYWWI
LLLLVVCTVGGFIFAYKRSPSMQHGMDRLILKVPIIGHIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=557178 KBV71_RS02910 WP_242786516.1 683461..684720(-) (pilC) [Xanthomonas translucens pv. translucens strain CIX95]
ATGTCCGCAACTCGTAGGGCAGCACCGAAACAACCAGTCGCGCGCAACACCAGCCAGCTGCTGCCGTTCCTCTGGGAAGG
AACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAAACCGCGAAGAACGCTAACTTGTTGCGCGCAGAATTACGCCGAC
AAGGCATCACACCGTCAGTGGTCAAGCCAAAGCCAAAGCCTTTGTTTGGCTCTGCCGGCAGCAAGATCAGCGCAAAGGAC
ATCGCTTTCTTCAGTAGGCAGATGGCAACGATGATGAAATCAGGCGTTCCGATCGTCTCCTCGCTGGAGATCATCGCCAG
CGGGCAAAAGAACGTGCGCATGAAGAACATGGTAAATCAAGTTCGCCTCGACATCGAGGGTGGCTCTTCTCTCTACGAGG
CAATTAGCAAGCATCCGGTTCAGTTCGATGAACTGTATCGCAATTTGGTCAAGGCTGGCGAAGGTGCGGGCGTACTGGAA
ACAGTGCTAGAGACGGTCGCCACCTACAAAGAGAGCATCGAGGCACTTAAAGGCAAGATTAAAAAAGCGCTATTTTACCC
AGCAATGGTCATGGCAGTGGCGTTATTGGTTAGCTCTATCCTTCTTGTTTGGGTGGTACCGCAATTCGAAGAGGTATTCA
AAGGCTTCGGCGCCGAGCTCCCCGTATTCACTCAAATGATCGTAGCAGCATCACGAATGATGGTTGCCTATTGGTGGATA
TTATTGCTGCTAGTAGTCTGCACTGTTGGCGGCTTTATTTTTGCTTACAAACGATCTCCTTCAATGCAGCACGGCATGGA
CCGGCTAATTTTGAAGGTGCCAATCATCGGCCATATCATGCACAACAGCTCGGTAGCGCGCTTCTCGCGAACCCTAGGAG
TGACCTTTCGCGCAGGCGTGCCACTAGTGGAGGCGCTGGACATCGTGGCAGGCGCCACCGGCAATAGTGTGTACGAGAAG
GCCGTGCTGCGCATGCGCGACGACGTCTCGGTCGGCTATCCGGTCAACATGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGCGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCAGTCGATGCACTGAGTAGCCTGATGGAACCGTTAATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTACCCATCTTCAAGTTAGGCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	52.228	96.42	0.504
pilC	Pseudomonas stutzeri DSM 10701	52.778	94.511	0.499
pilC	Acinetobacter baylyi ADP1	50.735	97.375	0.494
pilC	Acinetobacter baumannii D1279779	50.49	97.375	0.492
pilG	Neisseria gonorrhoeae MS11	42.462	94.988	0.403
pilC	Vibrio cholerae strain A1552	41.481	96.659	0.401
pilG	Neisseria meningitidis 44/76-A	41.709	94.988	0.396
pilC	Vibrio campbellii strain DS40M4	40.695	96.181	0.391
pilC	Thermus thermophilus HB27	39.206	96.181	0.377