Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J9537_RS00765 Genome accession   NZ_CP072888
Coordinates   150535..151782 (+) Length   415 a.a.
NCBI ID   WP_218256361.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain F162_2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 145535..156782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9537_RS00745 (J9537_00745) - 146572..147864 (+) 1293 WP_218256358.1 pitrilysin family protein -
  J9537_RS00750 (J9537_00750) - 147866..148591 (+) 726 WP_218256359.1 SDR family oxidoreductase -
  J9537_RS00755 (J9537_00755) - 148870..149736 (+) 867 WP_218256360.1 RodZ domain-containing protein -
  J9537_RS00760 (J9537_00760) pgsA 149771..150352 (+) 582 WP_010747262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J9537_RS00765 (J9537_00765) cinA 150535..151782 (+) 1248 WP_218256361.1 competence/damage-inducible protein A Machinery gene
  J9537_RS00770 (J9537_00770) recA 151906..152955 (+) 1050 WP_218256362.1 recombinase RecA Machinery gene
  J9537_RS00775 (J9537_00775) rny 153199..154755 (+) 1557 WP_010747259.1 ribonuclease Y -
  J9537_RS00780 (J9537_00780) - 154835..155977 (-) 1143 WP_218256363.1 site-specific integrase -
  J9537_RS00785 (J9537_00785) - 155990..156301 (-) 312 WP_218256364.1 hypothetical protein -
  J9537_RS00790 (J9537_00790) - 156303..156473 (-) 171 WP_218256365.1 hypothetical protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45319.62 Da        Isoelectric Point: 4.3814

>NTDB_id=556620 J9537_RS00765 WP_218256361.1 150535..151782(+) (cinA) [Enterococcus raffinosus strain F162_2]
MRAEIIAVGTELLLGQVVNTNATFLSEKLADMGIEVYFHTVVGDNPQRLEELLQLADTRSELIILCGGLGPTDDDLTKNV
LADHVGVPLVQNTEGLEALNAFFAQRQSTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGEKNNYILLPGPPSELKPMF
LEQARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTDLAEMIEQQSNPTIAPYAKPNEVTLRITAKTEDELSANALLDQTE
AEIMAKVGEFFYGYGEENSLVEVVVDLLKENNLSITAAESLTAGEFQATLGTIPGVSEVFPGGFVTYSKETKVSFLGLDS
TLLDRVGVVSEECAKEMAEAALRLAGTDYALSFTGVAGPDELEGKPKGTVYIGLAQKEGETLITENHFTRDRSYVRHSSV
MKGLDMLRRAILNKN

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=556620 J9537_RS00765 WP_218256361.1 150535..151782(+) (cinA) [Enterococcus raffinosus strain F162_2]
ATGAGAGCAGAAATTATTGCCGTGGGCACAGAACTTTTATTAGGACAGGTCGTAAATACGAATGCGACATTCTTATCAGA
GAAATTAGCGGATATGGGGATCGAGGTTTATTTCCACACAGTCGTAGGGGATAATCCTCAACGATTGGAAGAGTTGCTTC
AATTAGCAGATACTCGCAGTGAATTGATCATTTTATGTGGTGGTTTGGGACCGACAGATGATGATTTAACCAAAAATGTA
TTGGCGGATCATGTAGGGGTACCACTGGTTCAAAATACAGAAGGGTTAGAAGCATTAAATGCGTTCTTTGCGCAGCGTCA
AAGCACTATGACGCCGAATAACTTAAGGCAAATCGAAACTCTCCAAGATGGTATTCCTTTACCGAATCGGACAGGATTAG
CAATCGGCTGCTTATATAAAGGGGAGAAGAACAATTACATTCTACTACCAGGGCCACCTAGTGAATTGAAGCCGATGTTT
TTGGAGCAAGCACGTCCATTACTAGAAAAAGAATTTCCAACAACGGAAAAATTAACTTCACGTGTGTTACGTTTCTTCGG
AATCGGAGAATCAAAACTAGTGACAGATTTGGCAGAAATGATCGAACAGCAATCAAATCCAACGATTGCACCTTATGCGA
AGCCGAACGAAGTCACGTTGCGGATCACTGCGAAGACAGAGGATGAGTTGTCAGCCAATGCTCTATTGGATCAGACAGAG
GCTGAAATCATGGCTAAAGTCGGCGAATTCTTTTACGGCTATGGAGAAGAAAATAGCTTAGTTGAAGTCGTTGTTGATCT
ATTAAAGGAAAACAATTTAAGTATCACGGCGGCAGAAAGTTTAACTGCTGGAGAGTTCCAAGCAACGCTGGGAACAATTC
CAGGTGTTTCTGAAGTCTTTCCTGGAGGCTTTGTCACCTATTCCAAGGAAACAAAAGTAAGCTTCTTAGGGCTCGATTCT
ACGCTGCTAGACCGTGTTGGTGTAGTTAGTGAAGAATGTGCAAAAGAGATGGCAGAAGCCGCGCTGCGTCTTGCTGGAAC
CGATTATGCATTGTCCTTTACAGGTGTGGCTGGTCCTGATGAGTTAGAAGGAAAGCCGAAGGGAACAGTCTATATCGGAT
TGGCACAAAAAGAGGGTGAGACCCTGATTACAGAAAATCATTTTACCCGTGACCGTTCGTATGTTCGCCATAGTTCAGTC
ATGAAGGGCTTAGATATGCTGCGAAGAGCAATTCTAAACAAAAATTAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae Rx1

52.969

100

0.537
  cinA Streptococcus pneumoniae R6

52.969

100

0.537
  cinA Streptococcus pneumoniae D39

52.969

100

0.537
  cinA Streptococcus pneumoniae TIGR4

52.969

100

0.537
  cinA Streptococcus mitis SK321

52.732

100

0.535
  cinA Streptococcus mitis NCTC 12261

52.732

100

0.535
  cinA Streptococcus mutans UA159

51.923

100

0.52
  cinA Bacillus subtilis subsp. subtilis str. 168

47.7

99.518

0.475
  cinA Streptococcus suis isolate S10

42.548

100

0.427