Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J9318_RS12480 Genome accession   NZ_CP072844
Coordinates   2751612..2752847 (-) Length   411 a.a.
NCBI ID   WP_210560217.1    Uniprot ID   -
Organism   Psychrosphaera aestuarii strain PSC101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2746612..2757847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9318_RS12450 - 2747030..2748454 (+) 1425 WP_210560211.1 hypothetical protein -
  J9318_RS12455 arfB 2748501..2748914 (-) 414 WP_210560212.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  J9318_RS12460 yacG 2748916..2749146 (-) 231 WP_210560213.1 DNA gyrase inhibitor YacG -
  J9318_RS12465 - 2749158..2749907 (-) 750 WP_210560214.1 cell division protein ZapD -
  J9318_RS12470 coaE 2749968..2750624 (-) 657 WP_210560215.1 dephospho-CoA kinase -
  J9318_RS12475 pilD 2750641..2751537 (-) 897 WP_210560216.1 A24 family peptidase Machinery gene
  J9318_RS12480 pilC 2751612..2752847 (-) 1236 WP_210560217.1 type II secretion system F family protein Machinery gene
  J9318_RS12485 pilB 2752870..2754573 (-) 1704 WP_210560218.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J9318_RS12490 - 2754880..2755368 (-) 489 WP_210560219.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J9318_RS12495 nadC 2755641..2756486 (-) 846 WP_210560220.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J9318_RS12500 - 2756625..2757143 (-) 519 WP_210560221.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44345.07 Da        Isoelectric Point: 9.6683

>NTDB_id=556159 J9318_RS12480 WP_210560217.1 2751612..2752847(-) (pilC) [Psychrosphaera aestuarii strain PSC101]
MADNNKKKAVKKQIAYVYEGLNRRGGKIKGEIFAMSPTEAKGLLKKQGITPTKVRKKPTPLFGAGNKPVDSKDIAVLTRQ
IATMLTAGVPLVQSLEMIAKGAEKPNLQKLVTDVLMHVQSGSPVADALRTQPKYFDDLYCDLVESGEKSGALDSIFDRIA
IYKEKSEALKSKIKKAMTYPIAILAISFIVVGILLVYVIPSFEDIFASFGAELPAPTQMAIAASKVAQDYWIYVVAGIAV
GIYLFKRALRTNKRFADSMDALLLKAPIVGNIVNKGAIARYARTLSTTFAAGVPLHEALSSAAGASGNAVYKRAIQEIKA
DVSAGNMMHVAMRATNLFPDMVTQMVSIGEESGALDTMLERVANVYEQEVDDAVDGITALIEPFIMVFLGTIIGGLIVVM
YLPIFQMGNAV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=556159 J9318_RS12480 WP_210560217.1 2751612..2752847(-) (pilC) [Psychrosphaera aestuarii strain PSC101]
ATGGCAGATAACAACAAGAAAAAAGCCGTTAAAAAGCAGATTGCCTACGTTTATGAAGGATTAAATCGCCGTGGTGGTAA
AATTAAAGGCGAAATCTTCGCTATGTCGCCAACCGAAGCGAAAGGACTATTAAAAAAGCAAGGCATAACGCCCACTAAGG
TTCGTAAAAAACCAACACCTTTATTTGGTGCTGGCAATAAACCAGTCGATAGCAAAGACATCGCGGTATTAACTCGACAA
ATAGCAACTATGCTAACCGCCGGCGTGCCACTAGTGCAATCACTTGAAATGATCGCCAAAGGAGCCGAAAAACCTAACCT
TCAAAAACTCGTTACCGATGTTTTAATGCACGTTCAGTCAGGCTCGCCAGTAGCAGATGCTTTAAGAACACAGCCTAAAT
ACTTTGATGATCTGTATTGCGACCTTGTTGAGTCTGGAGAAAAGTCAGGCGCGCTAGACAGCATTTTCGATCGAATCGCC
ATTTATAAAGAAAAGTCTGAAGCCCTTAAGTCTAAAATCAAAAAAGCCATGACATACCCAATCGCGATATTAGCGATTTC
ATTTATCGTTGTGGGTATTTTATTGGTCTATGTAATCCCTAGCTTTGAAGACATATTCGCAAGTTTTGGAGCTGAATTAC
CGGCGCCGACTCAAATGGCGATTGCGGCCTCTAAAGTGGCGCAAGATTATTGGATTTATGTTGTTGCCGGTATAGCGGTT
GGGATTTATTTGTTTAAGCGAGCGTTAAGAACCAACAAACGCTTTGCCGATTCCATGGACGCCTTGTTATTAAAAGCGCC
CATTGTCGGTAATATTGTTAACAAAGGTGCAATTGCTCGATATGCACGAACGCTTTCCACTACTTTTGCCGCGGGTGTAC
CATTGCACGAAGCGCTAAGCTCTGCAGCTGGAGCTTCAGGTAATGCGGTATACAAGCGTGCAATTCAAGAAATTAAAGCG
GATGTGTCGGCAGGTAACATGATGCATGTGGCGATGCGAGCAACGAACCTGTTCCCTGATATGGTGACTCAAATGGTATC
TATTGGTGAAGAATCTGGTGCGTTAGATACAATGCTTGAGCGAGTTGCAAACGTATACGAGCAAGAAGTAGACGACGCTG
TAGATGGTATAACAGCACTAATCGAGCCGTTTATTATGGTATTTTTAGGCACCATTATCGGTGGTCTTATTGTTGTTATG
TACCTACCTATTTTCCAAATGGGTAACGCCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-200)

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.062

98.54

0.543
  pilC Acinetobacter baylyi ADP1

52.645

96.594

0.509
  pilC Acinetobacter baumannii D1279779

52.645

96.594

0.509
  pilC Legionella pneumophila strain ERS1305867

48.241

96.837

0.467
  pilC Vibrio cholerae strain A1552

45.063

96.107

0.433
  pilG Neisseria meningitidis 44/76-A

42.537

97.81

0.416
  pilG Neisseria gonorrhoeae MS11

42.537

97.81

0.416
  pilC Vibrio campbellii strain DS40M4

40.657

96.35

0.392