Detailed information NTG0556158

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J9318_RS12475
• Genome accession: NZ_CP072844
• Coordinates: 2750641..2751537 (-)
• Length: 298 a.a.
• NCBI ID: WP_210560216.1
• Uniprot ID: -
• Organism: Psychrosphaera aestuarii strain PSC101
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2745641..2756537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9318_RS12445	ndk	2746393..2746824 (-)	432	WP_155696217.1	nucleoside-diphosphate kinase	-
J9318_RS12450	-	2747030..2748454 (+)	1425	WP_210560211.1	hypothetical protein	-
J9318_RS12455	arfB	2748501..2748914 (-)	414	WP_210560212.1	alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB	-
J9318_RS12460	yacG	2748916..2749146 (-)	231	WP_210560213.1	DNA gyrase inhibitor YacG	-
J9318_RS12465	-	2749158..2749907 (-)	750	WP_210560214.1	cell division protein ZapD	-
J9318_RS12470	coaE	2749968..2750624 (-)	657	WP_210560215.1	dephospho-CoA kinase	-
J9318_RS12475	pilD	2750641..2751537 (-)	897	WP_210560216.1	A24 family peptidase	Machinery gene
J9318_RS12480	pilC	2751612..2752847 (-)	1236	WP_210560217.1	type II secretion system F family protein	Machinery gene
J9318_RS12485	pilB	2752870..2754573 (-)	1704	WP_210560218.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J9318_RS12490	-	2754880..2755368 (-)	489	WP_210560219.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J9318_RS12495	nadC	2755641..2756486 (-)	846	WP_210560220.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 33294.83 Da
• Isoelectric Point: 6.4463

>NTDB_id=556158 J9318_RS12475 WP_210560216.1 2750641..2751537(-) (pilD) [Psychrosphaera aestuarii strain PSC101]
MFDQFFYLLEHSSVFFISFVTILSLLVGSFLNVVIYRLPVMMEKQWACECRELLEDELKNPKKSQKQSEQDLQFNLVKPD
SHCPSCNAPVKAWQNIPVLSYLLLKGKCGSCANPISMRYPAIELLTAVASAIVAVKFGYSLETVFLVLLTWVFVCLIFID
IDKMLLPDQLTLPLLWLMLMASVWNVFLEPKWAIIGAAAGYLSLWFVYWGFKLLTGKEGMGFGDFKLLAVIGATVGIVKL
PMVILLSSAVGAVIGLSMMAFGDKTKNSQIPFGPYLAIAGWLTMLWGDEMLNGYLSLL

Nucleotide

• Length: 897 bp

>NTDB_id=556158 J9318_RS12475 WP_210560216.1 2750641..2751537(-) (pilD) [Psychrosphaera aestuarii strain PSC101]
ATGTTTGATCAGTTTTTTTATTTATTGGAACACTCCAGTGTTTTTTTTATCTCGTTTGTTACGATTTTATCGTTATTAGT
TGGTAGCTTTTTAAACGTTGTAATTTATCGATTGCCGGTAATGATGGAAAAGCAGTGGGCTTGTGAATGCCGAGAACTGC
TGGAAGACGAGCTGAAAAACCCAAAAAAATCTCAAAAGCAATCTGAGCAAGACTTACAATTCAACTTAGTTAAACCCGAC
TCACATTGTCCATCATGCAACGCACCGGTAAAAGCTTGGCAAAATATTCCAGTACTGAGTTATTTATTATTAAAAGGTAA
ATGTGGCTCATGTGCCAACCCTATTTCAATGCGTTATCCAGCGATTGAGTTACTGACCGCCGTCGCTTCTGCGATTGTCG
CAGTCAAGTTTGGTTATTCGTTAGAGACTGTCTTTTTAGTGTTATTAACTTGGGTATTTGTTTGCTTGATATTTATCGAT
ATCGACAAAATGTTATTGCCAGATCAGCTTACGTTACCCTTGCTATGGCTAATGTTAATGGCTTCGGTTTGGAACGTATT
TTTAGAGCCTAAGTGGGCTATCATTGGGGCCGCAGCTGGTTATTTAAGTTTATGGTTTGTTTATTGGGGTTTTAAGCTCC
TAACCGGTAAAGAAGGCATGGGTTTTGGCGACTTTAAATTGCTTGCGGTCATAGGTGCTACCGTTGGTATCGTAAAGTTA
CCTATGGTGATTCTACTATCTTCAGCTGTAGGTGCGGTTATTGGTCTAAGTATGATGGCCTTTGGAGATAAAACCAAAAA
CTCACAAATTCCATTTGGCCCTTATTTAGCCATTGCAGGTTGGTTAACTATGCTTTGGGGCGATGAGATGCTTAACGGTT
ATCTTTCTTTGTTATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (147-256)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.579	95.638	0.493
pilD	Acinetobacter baumannii D1279779	47.973	99.329	0.477
pilD	Acinetobacter nosocomialis M2	47.635	99.329	0.473
pilD	Vibrio cholerae strain A1552	48.592	95.302	0.463
pilD	Neisseria gonorrhoeae MS11	46.763	93.289	0.436