Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J9253_RS19130 Genome accession   NZ_CP072801
Coordinates   3952536..3953768 (-) Length   410 a.a.
NCBI ID   WP_228291435.1    Uniprot ID   -
Organism   Thiothrix litoralis strain AS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3947536..3958768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9253_RS19105 (J9253_19105) - 3947546..3949072 (-) 1527 WP_210222431.1 glucan biosynthesis protein -
  J9253_RS19110 (J9253_19110) opgC 3949260..3950447 (+) 1188 WP_210222432.1 OpgC domain-containing protein -
  J9253_RS19115 (J9253_19115) ubiE 3950393..3951145 (-) 753 WP_210222433.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  J9253_RS19120 (J9253_19120) - 3951220..3951642 (+) 423 WP_210222434.1 hypothetical protein -
  J9253_RS19125 (J9253_19125) pilD 3951655..3952527 (-) 873 WP_210222435.1 A24 family peptidase Machinery gene
  J9253_RS19130 (J9253_19130) pilC 3952536..3953768 (-) 1233 WP_228291435.1 type II secretion system F family protein Machinery gene
  J9253_RS19135 (J9253_19135) pilB 3953903..3955624 (-) 1722 WP_210222437.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J9253_RS19140 (J9253_19140) - 3955716..3957257 (-) 1542 WP_210222438.1 ATP-binding protein -
  J9253_RS19145 (J9253_19145) - 3957347..3958579 (+) 1233 WP_210222439.1 ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44730.48 Da        Isoelectric Point: 10.1774

>NTDB_id=555936 J9253_RS19130 WP_228291435.1 3952536..3953768(-) (pilC) [Thiothrix litoralis strain AS]
MNKSTQTKATPSAPQAVYSWEGVNRNGVKMRGETQAVNPNWLRAELRRKGINPGRIYKKPKPLFKPAIKPADIAQFARQL
TTMMRSGVPMVQSLELMASGGDNPSVRDLVKKLTADIEGGASLGTALSRHPKYFDKLFVNLIKAGEQAGTLETMLEKVAT
YKEKSEALKAKVKSAMMYPIIVVVAATVVSAILLIWVIPQFKEVFSGFGADLPAFTLLVISFSDWLVANWWMPIVAFVAI
GTSFSQARQRSPAFDRFVDKASLKIPIMGNILNLSAVARFARTLATMFAAGVPLVEAMDSVAGATGNALYEEASRRIQDD
TARGVQLNTAMMTTQLFPNMMVQMTRIGEESGRLEEMLAKVADYYEAQVDALVDTLAKQIEPLIMAVLGGIVGSLVIAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=555936 J9253_RS19130 WP_228291435.1 3952536..3953768(-) (pilC) [Thiothrix litoralis strain AS]
TTGAACAAGTCAACGCAGACCAAGGCAACACCCAGTGCGCCGCAAGCGGTCTACAGTTGGGAAGGCGTCAACCGCAACGG
CGTCAAGATGCGCGGGGAAACCCAGGCGGTAAACCCCAACTGGTTACGCGCGGAACTACGTCGCAAAGGCATTAATCCGG
GGCGCATTTACAAAAAACCCAAACCCTTATTCAAACCGGCGATCAAACCAGCGGATATTGCCCAGTTTGCCCGCCAGCTT
ACCACCATGATGCGCTCTGGTGTCCCGATGGTGCAGTCACTCGAATTGATGGCTTCCGGTGGTGACAATCCTTCGGTGCG
TGACCTTGTAAAAAAACTAACCGCTGACATCGAAGGCGGCGCCAGCTTGGGAACAGCTTTGTCACGTCACCCCAAATATT
TCGACAAACTGTTTGTGAATCTGATCAAGGCCGGTGAACAAGCGGGTACACTGGAAACTATGCTGGAAAAAGTGGCTACC
TATAAAGAAAAAAGTGAAGCCCTCAAAGCCAAGGTCAAAAGCGCCATGATGTACCCTATCATCGTTGTGGTGGCCGCAAC
CGTGGTATCGGCTATCCTGCTGATCTGGGTTATTCCGCAGTTCAAGGAAGTCTTCAGTGGTTTTGGTGCTGACCTGCCCG
CGTTCACCCTGTTGGTCATTTCCTTCTCGGACTGGCTGGTTGCCAACTGGTGGATGCCGATCGTTGCCTTTGTGGCTATT
GGCACCAGTTTTAGCCAAGCACGACAACGATCCCCGGCATTCGACCGCTTTGTGGATAAAGCCTCGTTAAAAATACCCAT
CATGGGTAATATCCTCAACCTGTCCGCCGTGGCACGTTTTGCCCGTACCCTGGCCACCATGTTTGCGGCAGGTGTACCAC
TGGTGGAAGCGATGGACTCGGTAGCCGGTGCCACCGGCAACGCCCTGTATGAAGAAGCCTCGCGCCGCATTCAGGACGAT
ACCGCACGCGGCGTACAGCTCAATACTGCCATGATGACCACCCAGTTATTCCCCAATATGATGGTACAAATGACCCGCAT
TGGTGAAGAGTCCGGGCGGTTGGAAGAAATGCTGGCGAAAGTCGCCGATTATTACGAAGCACAGGTAGACGCCTTGGTGG
ATACCCTTGCCAAACAGATTGAACCGCTGATCATGGCGGTACTGGGCGGTATTGTCGGCAGCCTGGTAATCGCCATGTAC
CTGCCCATCTTTAAACTTGGTTCGGTCGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

98.537

0.532
  pilC Acinetobacter baylyi ADP1

51.256

97.073

0.498
  pilC Legionella pneumophila strain ERS1305867

50

98.049

0.49
  pilC Acinetobacter baumannii D1279779

49.622

96.829

0.48
  pilG Neisseria meningitidis 44/76-A

43.147

96.098

0.415
  pilG Neisseria gonorrhoeae MS11

42.893

96.098

0.412
  pilC Vibrio campbellii strain DS40M4

40.842

98.537

0.402
  pilC Vibrio cholerae strain A1552

40.64

99.024

0.402