Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J6320_RS20545 Genome accession   NZ_CP072782
Coordinates   2702921..2704144 (+) Length   407 a.a.
NCBI ID   WP_213886707.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2697921..2709144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS20525 (J6320_20415) ampD 2698955..2699506 (-) 552 WP_042521337.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J6320_RS20530 (J6320_20420) nadC 2699599..2700486 (+) 888 WP_005379983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J6320_RS20535 (J6320_20425) - 2700742..2701200 (+) 459 WP_154205051.1 pilin -
  J6320_RS20540 (J6320_20430) pilB 2701212..2702897 (+) 1686 WP_248486980.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J6320_RS20545 (J6320_20435) pilC 2702921..2704144 (+) 1224 WP_213886707.1 type II secretion system F family protein Machinery gene
  J6320_RS20550 (J6320_20440) pilD 2704209..2705078 (+) 870 WP_017635919.1 A24 family peptidase Machinery gene
  J6320_RS20555 (J6320_20445) coaE 2705079..2705693 (+) 615 WP_017635920.1 dephospho-CoA kinase -
  J6320_RS20560 (J6320_20450) zapD 2705721..2706461 (+) 741 WP_005373086.1 cell division protein ZapD -
  J6320_RS20565 (J6320_20455) yacG 2706620..2706814 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  J6320_RS20570 (J6320_20460) rplS 2707469..2707822 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  J6320_RS20575 (J6320_20465) trmD 2707864..2708625 (-) 762 WP_005379965.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45357.61 Da        Isoelectric Point: 10.3992

>NTDB_id=555630 J6320_RS20545 WP_213886707.1 2702921..2704144(+) (pilC) [Vibrio alginolyticus strain HY9901]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSMSLFISA
RILSKRLDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=555630 J6320_RS20545 WP_213886707.1 2702921..2704144(+) (pilC) [Vibrio alginolyticus strain HY9901]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACATCTGGGCAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TTTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTGCCCTTGGTTCAGGCTTTAAAATTGGTATCAGAGAATCACAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCAGGGACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGATCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCAGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCACTGATCTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATGAGTTTATTCATTTCGGCG
AGAATCCTCTCTAAGCGTTTAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCTGTCCTGGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTAGCCATGCGCAACTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAGTC
TGGTCGACTTGACGACATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCATTAATTATCGTTTTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

40.943

99.017

0.405
  pilC Legionella pneumophila strain ERS1305867

40.049

100

0.4
  pilG Neisseria gonorrhoeae MS11

39.853

100

0.4
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396