Detailed information NTG0555631

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J6320_RS20550
• Genome accession: NZ_CP072782
• Coordinates: 2704209..2705078 (+)
• Length: 289 a.a.
• NCBI ID: WP_017635919.1
• Uniprot ID: A0A2I3C9C8
• Organism: Vibrio alginolyticus strain HY9901
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2699209..2710078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6320_RS20530 (J6320_20420)	nadC	2699599..2700486 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J6320_RS20535 (J6320_20425)	-	2700742..2701200 (+)	459	WP_154205051.1	pilin	-
J6320_RS20540 (J6320_20430)	pilB	2701212..2702897 (+)	1686	WP_248486980.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J6320_RS20545 (J6320_20435)	pilC	2702921..2704144 (+)	1224	WP_213886707.1	type II secretion system F family protein	Machinery gene
J6320_RS20550 (J6320_20440)	pilD	2704209..2705078 (+)	870	WP_017635919.1	A24 family peptidase	Machinery gene
J6320_RS20555 (J6320_20445)	coaE	2705079..2705693 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
J6320_RS20560 (J6320_20450)	zapD	2705721..2706461 (+)	741	WP_005373086.1	cell division protein ZapD	-
J6320_RS20565 (J6320_20455)	yacG	2706620..2706814 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
J6320_RS20570 (J6320_20460)	rplS	2707469..2707822 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
J6320_RS20575 (J6320_20465)	trmD	2707864..2708625 (-)	762	WP_005379965.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J6320_RS20580 (J6320_20470)	rimM	2708653..2709201 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
J6320_RS20585 (J6320_20475)	rpsP	2709231..2709479 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32563.76 Da
• Isoelectric Point: 6.8450

>NTDB_id=555631 J6320_RS20550 WP_017635919.1 2704209..2705078(+) (pilD) [Vibrio alginolyticus strain HY9901]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=555631 J6320_RS20550 WP_017635919.1 2704209..2705078(+) (pilD) [Vibrio alginolyticus strain HY9901]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATAGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A2I3C9C8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457