Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J8Y17_RS18535 Genome accession   NZ_CP072769
Coordinates   3569621..3570859 (-) Length   412 a.a.
NCBI ID   WP_071736935.1    Uniprot ID   -
Organism   Bacillus cereus strain BC07     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3564621..3575859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y17_RS18510 (J8Y17_18510) spoVS 3564705..3564965 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  J8Y17_RS18515 (J8Y17_18515) - 3565114..3565908 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  J8Y17_RS18520 (J8Y17_18520) rny 3566074..3567636 (-) 1563 WP_211479606.1 ribonuclease Y -
  J8Y17_RS18525 (J8Y17_18525) - 3568118..3568540 (-) 423 Protein_3600 DNA recombination/repair protein RecA -
  J8Y17_RS18530 (J8Y17_18530) recA 3568868..3569476 (-) 609 Protein_3601 recombinase RecA -
  J8Y17_RS18535 (J8Y17_18535) cinA 3569621..3570859 (-) 1239 WP_071736935.1 competence/damage-inducible protein CinA Machinery gene
  J8Y17_RS18540 (J8Y17_18540) pgsA 3570880..3571458 (-) 579 WP_001052964.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J8Y17_RS18545 (J8Y17_18545) - 3571522..3572433 (-) 912 WP_071727200.1 helix-turn-helix domain-containing protein -
  J8Y17_RS18550 (J8Y17_18550) - 3572455..3573240 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  J8Y17_RS18555 (J8Y17_18555) - 3573380..3573628 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  J8Y17_RS18560 (J8Y17_18560) - 3573704..3574417 (-) 714 WP_071727199.1 SDR family oxidoreductase -
  J8Y17_RS18565 (J8Y17_18565) - 3574521..3575807 (-) 1287 WP_088667288.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45350.56 Da        Isoelectric Point: 4.9577

>NTDB_id=555457 J8Y17_RS18535 WP_071736935.1 3569621..3570859(-) (cinA) [Bacillus cereus strain BC07]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=555457 J8Y17_RS18535 WP_071736935.1 3569621..3570859(-) (cinA) [Bacillus cereus strain BC07]
ATGAACGCTGAAATCATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAAGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCACTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACCGATGGTGCAGTTAGTAAAGAATGTGCCCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379