Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J8Y16_RS18235 Genome accession   NZ_CP072766
Coordinates   3552184..3553422 (-) Length   412 a.a.
NCBI ID   WP_071736935.1    Uniprot ID   -
Organism   Bacillus cereus strain BC06     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3547184..3558422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS18210 (J8Y16_18210) spoVS 3547268..3547528 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  J8Y16_RS18215 (J8Y16_18215) - 3547677..3548471 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  J8Y16_RS18220 (J8Y16_18220) rny 3548637..3550199 (-) 1563 WP_000099773.1 ribonuclease Y -
  J8Y16_RS18225 (J8Y16_18225) - 3550681..3551103 (-) 423 Protein_3544 DNA recombination/repair protein RecA -
  J8Y16_RS18230 (J8Y16_18230) recA 3551431..3552039 (-) 609 Protein_3545 recombinase RecA -
  J8Y16_RS18235 (J8Y16_18235) cinA 3552184..3553422 (-) 1239 WP_071736935.1 competence/damage-inducible protein CinA Machinery gene
  J8Y16_RS18240 (J8Y16_18240) pgsA 3553443..3554021 (-) 579 WP_071736934.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J8Y16_RS18245 (J8Y16_18245) - 3554085..3554996 (-) 912 WP_071736933.1 helix-turn-helix domain-containing protein -
  J8Y16_RS18250 (J8Y16_18250) - 3555018..3555803 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  J8Y16_RS18255 (J8Y16_18255) - 3555943..3556191 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  J8Y16_RS18260 (J8Y16_18260) - 3556267..3556980 (-) 714 WP_033682641.1 SDR family oxidoreductase -
  J8Y16_RS18265 (J8Y16_18265) - 3557084..3558370 (-) 1287 WP_212804195.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45350.56 Da        Isoelectric Point: 4.9577

>NTDB_id=555410 J8Y16_RS18235 WP_071736935.1 3552184..3553422(-) (cinA) [Bacillus cereus strain BC06]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=555410 J8Y16_RS18235 WP_071736935.1 3552184..3553422(-) (cinA) [Bacillus cereus strain BC06]
ATGAACGCTGAAATCATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCTCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCCCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379