Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J6600_RS08570 Genome accession   NZ_CP072563
Coordinates   1715558..1716808 (+) Length   416 a.a.
NCBI ID   WP_209388248.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1710558..1721808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS08540 (J6600_08540) - 1710639..1711925 (+) 1287 WP_025649450.1 pitrilysin family protein -
  J6600_RS08545 (J6600_08545) - 1711986..1712714 (+) 729 WP_014417800.1 SDR family oxidoreductase -
  J6600_RS08550 (J6600_08550) - 1712790..1713047 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  J6600_RS08555 (J6600_08555) - 1713176..1713967 (+) 792 WP_003154149.1 YmfK family protein -
  J6600_RS08560 (J6600_08560) - 1713986..1714885 (+) 900 WP_014417801.1 RodZ domain-containing protein -
  J6600_RS08565 (J6600_08565) pgsA 1714959..1715540 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J6600_RS08570 (J6600_08570) cinA 1715558..1716808 (+) 1251 WP_209388248.1 competence/damage-inducible protein A Machinery gene
  J6600_RS08575 (J6600_08575) recA 1716979..1718022 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  J6600_RS08580 (J6600_08580) - 1718190..1719371 (+) 1182 WP_209388249.1 serine hydrolase domain-containing protein -
  J6600_RS08585 (J6600_08585) rny 1719664..1721223 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45139.47 Da        Isoelectric Point: 5.2580

>NTDB_id=554228 J6600_RS08570 WP_209388248.1 1715558..1716808(+) (cinA) [Bacillus sp. LJBV19]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AARYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=554228 J6600_RS08570 WP_209388248.1 1715558..1716808(+) (cinA) [Bacillus sp. LJBV19]
ATGGAAATAGCAAAAAAAGCAGAGATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCTGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTCGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAGATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382