Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J5X93_RS01780 Genome accession   NZ_CP072559
Coordinates   376388..377635 (+) Length   415 a.a.
NCBI ID   WP_043208699.1    Uniprot ID   -
Organism   Pseudomonas sp. BYT-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371388..382635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X93_RS01765 (J5X93_01750) pilM 373974..374894 (+) 921 WP_250034325.1 pilus assembly protein PilM -
  J5X93_RS01770 (J5X93_01755) - 374894..375430 (+) 537 WP_090343357.1 PilN domain-containing protein -
  J5X93_RS01775 (J5X93_01760) - 375427..376443 (+) 1017 WP_238556597.1 pilus assembly protein PilP -
  J5X93_RS01780 (J5X93_01765) pilQ 376388..377635 (+) 1248 WP_043208699.1 secretin N-terminal domain-containing protein Machinery gene
  J5X93_RS01785 (J5X93_01770) aroK 377640..378158 (+) 519 WP_043208585.1 shikimate kinase AroK -
  J5X93_RS01790 (J5X93_01775) aroB 378256..379353 (+) 1098 WP_090343351.1 3-dehydroquinate synthase -
  J5X93_RS01795 (J5X93_01780) - 379369..381006 (+) 1638 WP_250034326.1 AAA family ATPase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44962.58 Da        Isoelectric Point: 5.0125

>NTDB_id=554173 J5X93_RS01780 WP_043208699.1 376388..377635(+) (pilQ) [Pseudomonas sp. BYT-1]
MVMAMLSSPAATASLYRGEPLSLNFQDIEVRAALQVLADHAGINLVASDTVQGSLTLRLEDVPWDQALDLVLRSKGLARR
EEGNVLVVAPIAELAEQFREARSGQALDAQLQPMRRELLPIHHAKAADMAELLLAALADEGILTGRGSLSVDPRTNTLVA
YQPADRLAELRRLVGQLDVPVRQVLIEARIVEANVDYEKSLGVRWGAPLQGDTARLGKELFVDLGVERGTSGIGLGVLRG
GTLLDLELSAMEKSGNGEIISQPKVVTADKETARIIKGTEVPYQETSKSGATSISFREASLSLEVTPQITPDGKVVMAVR
VTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTTQNNVVDKVPFLGDLPYVGRLFRRDVLQEKKSELLVF
LTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=554173 J5X93_RS01780 WP_043208699.1 376388..377635(+) (pilQ) [Pseudomonas sp. BYT-1]
ATGGTGATGGCAATGCTGTCGAGCCCGGCGGCGACAGCATCGCTCTATCGAGGTGAGCCGCTGTCCCTCAATTTCCAGGA
CATCGAAGTGCGCGCGGCGCTGCAGGTGCTGGCCGATCATGCCGGCATCAACTTGGTTGCCAGCGACACGGTACAAGGCA
GTCTTACCTTGCGCCTGGAAGACGTGCCCTGGGATCAGGCGCTGGACCTTGTATTGCGCAGCAAAGGACTGGCCCGGCGC
GAGGAGGGTAACGTTCTGGTGGTCGCGCCCATCGCGGAGCTGGCAGAGCAGTTTCGTGAAGCCCGGTCTGGGCAGGCGCT
GGATGCGCAATTGCAGCCCATGCGGCGTGAGCTGCTGCCGATCCATCACGCCAAGGCGGCGGACATGGCAGAGTTGCTGT
TGGCCGCGCTCGCCGACGAGGGCATTCTCACCGGGCGCGGCAGCCTGAGTGTCGACCCACGGACCAACACCTTGGTGGCC
TACCAGCCGGCCGACCGACTCGCCGAGTTGCGGCGACTGGTGGGGCAGCTGGATGTGCCGGTGCGACAAGTGCTGATCGA
GGCGCGGATCGTCGAGGCCAACGTCGATTACGAAAAAAGCCTGGGTGTGCGCTGGGGCGCGCCCCTGCAAGGCGATACCG
CTCGTCTGGGAAAAGAACTGTTCGTCGACCTGGGTGTGGAGCGGGGGACGTCCGGCATTGGGTTGGGGGTGCTACGAGGC
GGGACGCTGCTGGACTTGGAGCTCAGTGCCATGGAAAAGAGCGGAAACGGCGAGATCATCTCCCAGCCGAAGGTGGTCAC
CGCTGACAAGGAGACCGCGCGGATCATCAAGGGTACCGAGGTGCCTTACCAGGAAACCAGCAAGAGCGGCGCGACCTCCA
TCTCGTTTCGCGAGGCATCGTTATCGCTTGAGGTGACGCCGCAGATCACGCCCGATGGCAAAGTCGTGATGGCTGTCAGG
GTGACCAAGGACGAGCCTGACTACGTCAATGCACTGAACAACGTCCCGCCCATCCGCAAGAATGAGGTCAACGCCAAGGT
GCGGGTGGCGGACGGCGAGACGATCGTCATCGGTGGCGTTTACTCGACCACGCAAAACAATGTGGTCGACAAGGTGCCAT
TTTTAGGCGATCTGCCGTATGTTGGCAGGCTGTTTCGACGCGATGTATTACAAGAGAAAAAATCCGAGCTGCTGGTCTTC
CTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(44-89)

Bacterial type II/III secretion system short domain (Secretin_N)

(118-183)

Bacterial type II and III secretion system protein (Secretin)

(250-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

60.092

100

0.631
  comQ Acinetobacter baylyi ADP1

43.43

100

0.47
  pilQ Acinetobacter baumannii D1279779

41.703

100

0.46
  pilQ Acinetobacter baumannii strain A118

41.703

100

0.46
  pilQ Legionella pneumophila strain Lp02

43.437

100

0.439
  pilQ Legionella pneumophila strain ERS1305867

43.437

100

0.439
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.823

100

0.431
  pilQ Vibrio cholerae strain A1552

42.823

100

0.431
  pilQ Vibrio campbellii strain DS40M4

40.662

100

0.414