Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J7D37_RS16240 Genome accession   NZ_CP072526
Coordinates   3404398..3406524 (-) Length   708 a.a.
NCBI ID   WP_038347685.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3399398..3411524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16225 (J7D37_16225) - 3401815..3402690 (-) 876 WP_000218807.1 hypothetical protein -
  J7D37_RS16230 (J7D37_16230) aroB 3402706..3403788 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  J7D37_RS16235 (J7D37_16235) aroK 3403817..3404386 (-) 570 WP_000643712.1 shikimate kinase AroK -
  J7D37_RS16240 (J7D37_16240) pilQ 3404398..3406524 (-) 2127 WP_038347685.1 type IV pilus secretin PilQ Machinery gene
  J7D37_RS16245 (J7D37_16245) pilP 3406587..3407114 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J7D37_RS16250 (J7D37_16250) pilO 3407125..3407865 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7D37_RS16255 (J7D37_16255) pilN 3407862..3408503 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  J7D37_RS16260 (J7D37_16260) pilM 3408503..3409561 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76554.08 Da        Isoelectric Point: 7.3160

>NTDB_id=554046 J7D37_RS16240 WP_038347685.1 3404398..3406524(-) (pilQ) [Acinetobacter baumannii strain DETAB-E227]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVASAQPQGVSNIGFQRGSQGEGLVV
IDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKSPPDKSASSSYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGAAANRTANSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTKNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=554046 J7D37_RS16240 WP_038347685.1 3404398..3406524(-) (pilQ) [Acinetobacter baumannii strain DETAB-E227]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGCTCAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCTAGTTCTGTAGATGTTACTTCAGATGATCAGCGTTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTAGAAGGTAATACCTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGCCTCAGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
ATAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGCTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTAAAAAGCCCACCAGATAAAAGTGCATCATCTTCATATAAGGCACCAAGTTATTCAGGGAATAAACTTTCCTTAGA
CTTCCAGGATATTGAAGTTCGTAGGGTTCTGCAGTTACTGGCTGATTTTACAGGCATTAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACATTACGTTTAAAAGATGTGCCTTGGGATCAGGCGCTTGATATTATTTTAAAAACTAAAAATCTC
GATAAACGACGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATTAAAGCTGAGGATGATCAGGCAAAAGC
TTTAGCGCAAACTATTAAGTTGGCACCGATACAAACAGATTATATTCGGATGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCGGCCGCAAACCGTACCGCTAATTCAGATGCTCTTGCTTTAGAGAGT
TTGCTGAGCTCTCGTGGTAGTGCGGTTGCTGACACACGTACTAATACCTTAATTGTAAATGATACGGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTACTTGATGTGCAAGTTAAACAGGTCATGGTTGAGGCACGTATTGTGAGAGCTTCTA
CGTCATTTACGAAAGAGCTTGGGGTGAAGTGGGGGATTCTTTCACAAGGCATTACCAATAATAAAAACTTATTGGTTGGC
GGGAGTGAAACAACCTTGTGGAATTTACGTGAGCCGAAGAAAGATGAAACTACGGGAGGCTATAAATATACGATTGAGCG
TCCAGATAACTTAAACGTGGATTTAGGGGTCACTAATCCCGCAGGAAGTATCGCTTTCGGCTTAATTAGTATGTCTGACT
TTATGTTGGATCTTGAATTGTCTGCTTTACAAGCCGATGGTTATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCC
GATAAACAAACTGCGAAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGATCTACAGC
AACGACATCATTTAAAGATGCACTCTTAAGTCTTGATGTGACCCCGAGTATTACACCTGATGGCAAAATTCAAATGAAGT
TGGATATTTCTAAGGACTCTATAGCAGGTGAAGCGCCTAATGGCGAGTTGATTCTGAATAAGAATAATATCAATACCAAT
GTATTGGTAGATAATGGCGAAACTGTCATTTTAGGTGGAGTATTTGAGCAGACAACAAAGAATTCACAAACCAAAGTTCC
TTTCTTTGGTGATATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTT
TCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

89.182

100

0.908
  pilQ Acinetobacter baumannii strain A118

89.043

100

0.907
  comQ Acinetobacter baylyi ADP1

72.829

100

0.734
  pilQ Pseudomonas aeruginosa PAK

39.8

99.011

0.394