Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J7D37_RS16255 Genome accession   NZ_CP072526
Coordinates   3407862..3408503 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3402862..3413503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16235 (J7D37_16235) aroK 3403817..3404386 (-) 570 WP_000643712.1 shikimate kinase AroK -
  J7D37_RS16240 (J7D37_16240) pilQ 3404398..3406524 (-) 2127 WP_038347685.1 type IV pilus secretin PilQ Machinery gene
  J7D37_RS16245 (J7D37_16245) pilP 3406587..3407114 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J7D37_RS16250 (J7D37_16250) pilO 3407125..3407865 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7D37_RS16255 (J7D37_16255) pilN 3407862..3408503 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  J7D37_RS16260 (J7D37_16260) pilM 3408503..3409561 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J7D37_RS16265 (J7D37_16265) ponA 3409723..3412278 (+) 2556 WP_038347682.1 penicillin-binding protein PBP1a -
  J7D37_RS16270 (J7D37_16270) - 3412296..3413120 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  J7D37_RS16275 (J7D37_16275) - 3413123..3413455 (-) 333 WP_038347679.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=554049 J7D37_RS16255 WP_000201227.1 3407862..3408503(-) (pilN) [Acinetobacter baumannii strain DETAB-E227]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=554049 J7D37_RS16255 WP_000201227.1 3407862..3408503(-) (pilN) [Acinetobacter baumannii strain DETAB-E227]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709