Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J7D37_RS16250 Genome accession   NZ_CP072526
Coordinates   3407125..3407865 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3402125..3412865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16230 (J7D37_16230) aroB 3402706..3403788 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  J7D37_RS16235 (J7D37_16235) aroK 3403817..3404386 (-) 570 WP_000643712.1 shikimate kinase AroK -
  J7D37_RS16240 (J7D37_16240) pilQ 3404398..3406524 (-) 2127 WP_038347685.1 type IV pilus secretin PilQ Machinery gene
  J7D37_RS16245 (J7D37_16245) pilP 3406587..3407114 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J7D37_RS16250 (J7D37_16250) pilO 3407125..3407865 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7D37_RS16255 (J7D37_16255) pilN 3407862..3408503 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  J7D37_RS16260 (J7D37_16260) pilM 3408503..3409561 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J7D37_RS16265 (J7D37_16265) ponA 3409723..3412278 (+) 2556 WP_038347682.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=554048 J7D37_RS16250 WP_000076101.1 3407125..3407865(-) (pilO) [Acinetobacter baumannii strain DETAB-E227]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=554048 J7D37_RS16250 WP_000076101.1 3407125..3407865(-) (pilO) [Acinetobacter baumannii strain DETAB-E227]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683