Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZ175_RS05420 Genome accession   NZ_CP090448
Coordinates   1105638..1107299 (-) Length   553 a.a.
NCBI ID   WP_000880892.1    Uniprot ID   -
Organism   Escherichia coli strain PT62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100638..1112299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ175_RS05375 (LZ175_05375) kbp 1100800..1101249 (-) 450 WP_000522413.1 potassium binding protein Kbp -
  LZ175_RS05380 (LZ175_05380) yqaE 1101333..1101491 (-) 159 WP_000508177.1 YqaE/Pmp3 family membrane protein -
  LZ175_RS05385 (LZ175_05385) - 1101606..1102303 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -
  LZ175_RS05390 (LZ175_05390) - 1102318..1102935 (-) 618 Protein_1054 integrase domain-containing protein -
  LZ175_RS05400 (LZ175_05400) smpB 1103716..1104198 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  LZ175_RS05405 (LZ175_05405) ratA 1104369..1104806 (+) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  LZ175_RS05410 (LZ175_05410) yfjF 1104796..1105086 (+) 291 WP_001117843.1 RnfH family protein -
  LZ175_RS05415 (LZ175_05415) bamE 1105148..1105489 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  LZ175_RS05420 (LZ175_05420) recN 1105638..1107299 (-) 1662 WP_000880892.1 DNA repair protein RecN Machinery gene
  LZ175_RS05425 (LZ175_05425) nadK 1107385..1108263 (-) 879 WP_001059169.1 NAD(+) kinase -
  LZ175_RS05430 (LZ175_05430) grpE 1108386..1108979 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  LZ175_RS05435 (LZ175_05435) yfjD 1109033..1110319 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  LZ175_RS05440 (LZ175_05440) ypjD 1110340..1111131 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61379.33 Da        Isoelectric Point: 5.2547

>NTDB_id=554047 LZ175_RS05420 WP_000880892.1 1105638..1107299(-) (recN) [Escherichia coli strain PT62]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRNGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDHLDLDPNRLFELEQRLSKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=554047 LZ175_RS05420 WP_000880892.1 1105638..1107299(-) (recN) [Escherichia coli strain PT62]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTAATGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGCGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTACTGCAATACCAATTGAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTTCGCCACTACTGCGATCATCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCCTCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAATTTCGGGTAACCACCAACCCTGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTAATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGCGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.336

100

0.383
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362