Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J7D37_RS16245 Genome accession   NZ_CP072526
Coordinates   3406587..3407114 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3401587..3412114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16225 (J7D37_16225) - 3401815..3402690 (-) 876 WP_000218807.1 hypothetical protein -
  J7D37_RS16230 (J7D37_16230) aroB 3402706..3403788 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  J7D37_RS16235 (J7D37_16235) aroK 3403817..3404386 (-) 570 WP_000643712.1 shikimate kinase AroK -
  J7D37_RS16240 (J7D37_16240) pilQ 3404398..3406524 (-) 2127 WP_038347685.1 type IV pilus secretin PilQ Machinery gene
  J7D37_RS16245 (J7D37_16245) pilP 3406587..3407114 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J7D37_RS16250 (J7D37_16250) pilO 3407125..3407865 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J7D37_RS16255 (J7D37_16255) pilN 3407862..3408503 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  J7D37_RS16260 (J7D37_16260) pilM 3408503..3409561 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=554047 J7D37_RS16245 WP_000695065.1 3406587..3407114(-) (pilP) [Acinetobacter baumannii strain DETAB-E227]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=554047 J7D37_RS16245 WP_000695065.1 3406587..3407114(-) (pilP) [Acinetobacter baumannii strain DETAB-E227]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAGCCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTAATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714